PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18418
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 858aa    MW: 94821.3 Da    PI: 9.07
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18418genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.2e-24336437199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++p++ ae++       + +   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +++el++
  EMT18418 336 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyqQ-IR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RGDDGELRL 432
               99****************************9843.43.4569************************************************..3489999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +v+r+
  EMT18418 433 GVRRA 437
               *9986 PP
2Auxin_resp110.31.9e-36462542182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a++++++svF+++YnPra++seF+++++k++k+l++++++GmRfk+++ +ed++err sG+++g++d+dp+rW++SkW+sL
    EMT18418 462 VANSLKHRSVFHICYNPRAAASEFIIPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERR-SGMITGINDVDPIRWTGSKWKSL 542
                 68999*****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-44320475IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-38332437IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-22334436No hitNo description
PfamPF023621.1E-22336437IPR003340B3 DNA binding domain
SMARTSM010194.4E-24336438IPR003340B3 DNA binding domain
PROSITE profilePS5086313.225336438IPR003340B3 DNA binding domain
PfamPF065072.1E-29463542IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MSNPTTINCL YNMKTVARDF ALQLWRVASP YPRNHVHLTV PSQPRSPRRT LEATFTSPLE  60
EDEVDIEGGS SFFADELATQ ANANKKRQSI QTKAYTKDED KLLCECWRDI GQDPKIGAEQ  120
KAPTFWLSVH RQFHECKKFA PYKMESKRGW VSLSKRRRVI QQECNKFCAT LESIEGRPMS  180
GFGIKDMAFQ ALEAFKAQHG NKPSTLTYCW MVIKGDEKFK EQYVALRKSG GLEAVEEHGV  240
GEKPRPRGKT NSKTDDERAA SSNQQKANKM RVCLDRRVAL KSKEKADPAT DEVYARLALV  300
AEGEVFEKNM GGGRFEGEDD MEDGDGERKS RMLHMFCKTL TASDTSTHGG FSVPRRAAED  360
CFPPLDYQQI RPSQELVAKD LHGAKWRFRH IYRGQPRRHL LTTGWSSFVN KKKLVSGDAV  420
LFLRGDDGEL RLGVRRAIQL KNEALLKAFN SNSSKIHTLS AVANSLKHRS VFHICYNPRA  480
AASEFIIPYW KFLKSLNRPF CIGMRFKIQY GSEDVNERRS GMITGINDVD PIRWTGSKWK  540
SLLVRWEDGT DCNSQNRLSP WEIEIVGGSV SIAQSLSASS SKRTKLCPQG NVDVPTLYGN  600
GRPDSVGADK LPRVLQGQEL MGSGTHRVTC PPQPGGATEF RRSDGTGFLA NTRSCMLSGP  660
ASRFPPQSPY FAYQPVGFGE SVGFPEVLQG QEVSQTVPLF QGIVSDTCSA KGGYGLYNYM  720
RPSSAMNGGF SSAAQGYPLS LSTPPPAEAA SPSSAALWLA SKSNEEAANG SQLNQFGIPK  780
SPGDGAAKLG SDGRKVARTS CMLFGFSLTE KMLPTEEDCA KEGSHEADCQ NPRMLDLFGY  840
NRATPGALHA LCAAPLGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-7827956477353Auxin response factor 1
4ldy_B4e-7827956477353Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KRRRV
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761300.0AY376130.1 Triticum aestivum ETTIN-like auxin response factor (ETT-L alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175130.10.0auxin response factor 3-like
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLR7WA270.0R7WA27_AEGTA; Auxin response factor
STRINGEMT184180.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-121ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]