PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18330
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 479aa    MW: 52814.4 Da    PI: 6.0034
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18330genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34611532103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++++++l+ +isw   gnsfvv+++++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+k+ll++i 
      EMT18330  61 FLSKTYDLVSEPQLDGVISWGPAGNSFVVWNPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEGFLRGSKHLLKTIV 148
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
      EMT18330 149 RRRSS 153
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5557150IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.45E-3357150IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-3757150IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-176184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-1799111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-17112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDAALLLEPK LEMMQQQQPS PAGHYAALDH HLIPPPPALV VPCEPPRPLE ALLQGPQLPP  60
FLSKTYDLVS EPQLDGVISW GPAGNSFVVW NPSTFARDVL PHNFKHNNFS SFVRQLNTYG  120
FRKVHADRWE FAHEGFLRGS KHLLKTIVRR RSSPTQQSSL QPGSSIFRKI QSGSSGESTV  180
DPELRSLRRE KNALLQEVAR LKEEHNQTIE HMNALNQRLE TAEDRQKQVV SFLAKLLQNP  240
DFLRQLKMHR ERRDGIDSAR VKRKFLKHVP HGSRDSGDSS SPRTAESTCS PAHPVAHDAI  300
ADLQSFLLED TDLSDGMMPG NFGLDGVEAS EDIGALVQVF DQQDPGTGAE LLGIPPVSGA  360
AHCQDLTVGR SKGKNVMCPG GTDGTSSQAD CLVPLPGNVG KLMDADGEQI WGADTFFQSS  420
CSGTSQQTYV SDPYLIAIPD KHEKFWEVDF EALDDGDLHL DKCVIGDPAL EQHRGNMKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-265315311123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4460280.0HM446028.1 Hordeum vulgare subsp. vulgare heat shock factor A3 (HsfA3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146599.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A453BAS80.0A0A453BAS8_AEGTS; Uncharacterized protein
STRINGEMT183300.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.15e-72heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]