PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17386
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 480aa    MW: 55092.2 Da    PI: 7.6635
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17386genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.9e-17233323390
               EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
        B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                + +++ +l+ g+lv+ k+fa++h    ++++t++l   +++++W+ +l +     + ++++l++GW +Fv++n+L+egD++ F+++++ ++ 
  EMT17386 233 VTVMNEKSLSDGCLVICKDFAAKHLP--HKDQTIKLCYpQNSKTWDANLAVitdGACTRSCILAAGWLDFVRDNNLREGDICAFEVSKDhDRV 323
               57789999****************53..35568999884666*******77775555555*************************98874444 PP
2B352.21.1e-163894781098
               HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
               +++++ l++  ++a++h   +e+   ++l+   ++ +W+ kl + +k +g+ y l++GWk+Fv++n+L++ D+++F+l +++e +++v+++r
  EMT17386 389 YSSRAKLSIEVRYATAHLPREEQ--WVRLQLpGKNHTWKAKLYIgDKDKGKcYALQTGWKKFVDDNKLQDDDMCLFELLKNEELTMNVHIIR 478
               5677889********99544444..68887744669******5577777778**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-10106175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-10109176IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-9111174No hitNo description
SuperFamilySSF1019362.94E-18228328IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-18230328IPR015300DNA-binding pseudobarrel domain
CDDcd100174.35E-14231328No hitNo description
PROSITE profilePS5086312.675231333IPR003340B3 DNA binding domain
SMARTSM010191.4E-7232333IPR003340B3 DNA binding domain
PfamPF023621.1E-13233327IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-18376478IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16378478IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.196380480IPR003340B3 DNA binding domain
SMARTSM010193.9E-11383480IPR003340B3 DNA binding domain
PfamPF023627.2E-15389479IPR003340B3 DNA binding domain
CDDcd100171.63E-13389478No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MHPVAVEISS YEELLANRYT PNHVLQTILE YPLGVLIVAY LRGIRAANIE NQVANYQLDQ  60
DNLVPTPLDI YHSILEALVD QRCLLHFCLQ SSPLCLECVD RHYWHMKDHD WCFVKVMSLS  120
NFKDEMAIPD EFTTNFRGHI SDKVKLEVAD GNIYNVQVAK EQDKFILRSG WVDFTAQDVT  180
SSKYIPEPRS SGGLPGSTES RYILEKGCIL TSAQKARVDT FVKESWTGIQ FYVTVMNEKS  240
LSDGCLVICK DFAAKHLPHK DQTIKLCYPQ NSKTWDANLA VITDGACTRS CILAAGWLDF  300
VRDNNLREGD ICAFEVSKDH DRVIITVHLL KNVVVTGHTK STSQQQKKWT HPGYVVTKYT  360
KLTCKQKRKI EERIQAIRPE TRIFVSIIYS SRAKLSIEVR YATAHLPREE QWVRLQLPGK  420
NHTWKAKLYI GDKDKGKCYA LQTGWKKFVD DNKLQDDDMC LFELLKNEEL TMNVHIIRGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1465875e-95AY146587.2 Triticum turgidum subsp. durum Pm3 locus, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161799.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_020161800.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X2
TrEMBLN1R3W80.0N1R3W8_AEGTA; B3 domain-containing protein
STRINGEMT173860.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-08B3 family protein