PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16651
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 306aa    MW: 33308.7 Da    PI: 5.4346
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16651genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81.1e-161865249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              rie +s rqv fskRr+g++ KA E+ v+C+aeva++  s+ gk + +
  EMT16651 18 RIEKESARQVCFSKRRQGLFIKATEMAVMCGAEVAIVASSPGGKAFSF 65
              8****************************************9997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.427969IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-22968IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-231083IPR002100Transcription factor, MADS-box
CDDcd002655.44E-311084No hitNo description
PRINTSPR004043.5E-151131IPR002100Transcription factor, MADS-box
PfamPF003191.1E-191865IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-153146IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-154667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAPKQKGGNG RQKIAIRRIE KESARQVCFS KRRQGLFIKA TEMAVMCGAE VAIVASSPGG  60
KAFSFGHPSA EAVIDRFLSG GGAGVLSVAN DNELKKLHLQ HGELRMLLKE VKERKECVEE  120
AMAKERAAGD QIAMWLNPKL CDMGEEEMIA FAAELRVVRA AVSERTNQAL LDEQNIHRML  180
QARAPPLQPL FGGSTFEGFA AGMDMHHMPM EMPPPLGSAY GMDMQQILMP TPSPSMFDAG  240
MEMQQMVTVV SPQLEFATEA EMQQMFMAMS PMSELSAGME MPPPTGIAAG VEMVQQGPGP  300
NMGFPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157127.11e-139agamous-like MADS-box protein AGL61
TrEMBLR7W6B50.0R7W6B5_AEGTA; Agamous-like MADS-box protein AGL61
STRINGEMT166510.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-25AGAMOUS-like 61