PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT16418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 359aa MW: 39734.5 Da PI: 4.4684 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.5e-18 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r+++ +g+W+AeIrdps+ r++lg+f +aeeAa+a++ +++++g EMT16418 132 QFKGIRQRP-SGKWAAEIRDPSK---GVRVWLGTFNSAEEAARAYDVEALRIHG 181 69*******.7*********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-29 | 132 | 190 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.67E-31 | 132 | 190 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-20 | 132 | 190 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-36 | 132 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.603 | 132 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-8 | 133 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-10 | 133 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-8 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MCGGRQLEDA EAPAVRRKVM ATTLWTEKKK PRRSDGVGRH FTGLGGCGRL RLDDNEEDFD 60 AEFKEFEANS GDSDMELGPG GVVEKDDEEE VTEIKPFAAI KRSLSHDDLS IMSTNVFDGP 120 SERPAKRKRK NQFKGIRQRP SGKWAAEIRD PSKGVRVWLG TFNSAEEAAR AYDVEALRIH 180 GKKAKVNFPE EPAVQEPKAP KPNAAQEPTV TPAVNNPANT NAFVYPSTDF ASSQPLIQLD 240 NVPFVPTMKY VAPVEALAMN MYSGQGSNIF GWSDLGWEYD IKTPYISSMA PISTIAEGAE 300 STLVQSNTYN SVVIVEGAEF ALVESNTYNS MVPLVMENDV VDNMDLWNFD DMPICDEFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 131 | 189 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ711058 | 1e-138 | FJ711058.1 Dasypyrum villosum putative ethylene responsive element binding protein (EREBP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149547.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-100 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | R7W6S9 | 0.0 | R7W6S9_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | EMT16418 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 5e-33 | ERF family protein |