PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT16026 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26320.3 Da PI: 7.8714 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.8 | 3.4e-14 | 15 | 48 | 8 | 41 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifs 41 r f kR++g++KKA EL vLCda+ +v+++ EMT16026 15 TRRKRFKKRLKGLMKKADELAVLCDAKTCVLVYE 48 455579**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.456 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-7 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-16 | 4 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-13 | 13 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-5 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-5 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRNVTLQYT PHDSTRRKRF KKRLKGLMKK ADELAVLCDA KTCVLVYEEG KAAPEVFPSQ 60 AEAVGILNRF KSIPELWRCE EVMNQKGFIT KRIDKLREQV DKTRRECEDG EIRSLLHKTM 120 HGDLSGLVGL NIEDLTKVGY KVDMLLKSIT ERKEKIHSQA PPPAPCVATG SIDMGSPPLY 180 PAPPQQESRL DMVSSGGDLD TLVYGGYAGA NFSSSDTMMQ MQSFDMDFGS SPFPPM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174675.1 | 1e-176 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | N1R168 | 1e-176 | N1R168_AEGTA; MADS-box transcription factor PHERES 2 | ||||
STRING | EMT16026 | 1e-176 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-19 | AGAMOUS-like 80 |