PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15692
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 486aa    MW: 53117.5 Da    PI: 9.3806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15692genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3406.8e-131432251297
               HTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3  12 ksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               +   +++p +f+++h    + + ++s++  +  ++g+ W v+l  +++++ ++ ++ W eF  a++L +g +++F+++ +++f   v+vf
  EMT15692 143 E--KMTIPDEFVQQHliglE-SCPSSQKALIIGPTGKLWPVEL--DQRQSDVLYGEVWAEFLTAHDLSQGNILLFRYEVNMSF--SVQVF 225
               3..389***********853.456888999*************..999999**************************998999..77665 PP
2B3352.5e-11301379182
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
               f k+ t+s+ +k+  + + ++f++++g++ +++++l+   es rsW v +++ ++  +y+ +kGWk+F+++n+ +++ + vF
  EMT15692 301 FTKQITSSSLTKL--FAVKRTFCSSIGLVGACTIELKTSMESTRSWPVAFNIANTY-GYLTGKGWKRFCRDNECEQNIVPVF 379
               6777766666655..7999**********99*99999999**********654443.6999***********9887766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-109110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-119110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.42811108IPR003340B3 DNA binding domain
SMARTSM010190.002513108IPR003340B3 DNA binding domain
CDDcd100175.70E-81799No hitNo description
Gene3DG3DSA:2.40.330.101.3E-16127230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.898130228IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-16130235IPR015300DNA-binding pseudobarrel domain
CDDcd100172.83E-13131225No hitNo description
SMARTSM010193.9E-9133228IPR003340B3 DNA binding domain
PfamPF023625.9E-9143224IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-8299379IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.345299401IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-11299379IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.061301396IPR003340B3 DNA binding domain
PfamPF023626.6E-8301379IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MALSVRRQPR YKFAAPVLSP SCLQKLCVPW EFAARLAAGA GDVHVVDLLG KPRRVELCVR  60
PRPDGGVACW LGAGWPEIVR KNGIGEGWSV VLRRERRGMA TLTAFDPACC LVRLCAPPAG  120
RGRGVTSKTR PRFIKLLRPD DWEKMTIPDE FVQQHLIGLE SCPSSQKALI IGPTGKLWPV  180
ELDQRQSDVL YGEVWAEFLT AHDLSQGNIL LFRYEVNMSF SVQVFLPNGC MKEYPYLADE  240
ADGPSTALPQ SAKQLVAATV SKKRKYNRQV VSAIPAPVPA IKAKKVESQS KPAGVLRGHS  300
FTKQITSSSL TKLFAVKRTF CSSIGLVGAC TIELKTSMES TRSWPVAFNI ANTYGYLTGK  360
GWKRFCRDNE CEQNIVPVFC LPMPMSLAND SSCSAGYSLG KEINANLACR QAPVNLLKNG  420
KPLLGEKSIP SYLYYQNNQE PGVLSLEEGA GTCKGPMNCH KSLARSYLGK GTSAIAGFDT  480
PQVDDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194548.10.0putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL71e-111Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLN1R3C50.0N1R3C5_AEGTA; Putative B3 domain-containing protein
STRINGEMT156920.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-12B3 family protein