PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT15150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 345aa MW: 37803.8 Da PI: 6.1259 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.3 | 2e-13 | 17 | 55 | 7 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 s r + +R++g++KKA L +LCd++ +v++++++g EMT15150 17 STRRSRYKQRLKGLMKKAGDLATLCDVDTCVVVYGEDGA 55 55666899*****************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-8 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.02E-19 | 5 | 87 | No hit | No description |
SuperFamily | SSF55455 | 9.42E-17 | 6 | 97 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.32 | 7 | 63 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-11 | 15 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGRLPKKVTL GYVRHDSTRR SRYKQRLKGL MKKAGDLATL CDVDTCVVVY GEDGAAPEVF 60 PSSDKAVGIL NGFKSMPELG HCKKTMDQEG LLTERIAKLQ EQVDKSRREC QDRETRYLLQ 120 QIMDGNLPGH VGLSVEQLAR VGYKVEEMIK TMGERMGKTH SQAPPPAPCV TTGSIDMGSP 180 ALHQAPEQQQ EGTLVGGYAG GHDGAGFTGG DTVMQMQSFN LEFGSSHFPP MYQAPPPAPW 240 VTTGSVDMGS TALHQAPVQR QEGTLLSSGG DLGTLVYGGY AGGHEGAGFT VGDTMMQMQS 300 FNLEFDWSRF PPIFFWTAHA CLDNDLRLYY IATEWHTVVP IDQYF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174675.1 | 1e-87 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | N1R366 | 0.0 | N1R366_AEGTA; Agamous-like MADS-box protein AGL80 | ||||
STRING | EMT15150 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-24 | AGAMOUS-like 80 |