PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15111
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family AP2
Protein Properties Length: 355aa    MW: 39320.4 Da    PI: 7.9341
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15111genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.42e-0949105155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV+++  +g+++++++d  +     +++r + g ++t+e Aa+ ++ a++k++g
  EMT15111  49 SVYRGVSRHCASGKYEVHLWDrHYR-StvQNRRGRQGAYDTEEAAARTYDLAALKYWG 105
               78*******************5554.4577799999********************98 PP
2AP225.33.7e-08151188136
       AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkf 36 
               s+y+GV  ++k+grW+A+I + s  +g  +++ +lg f
  EMT15111 151 SKYRGVAKHHKKGRWEARIGCGSGsGGgSKRYLYLGIF 188
               89*******************777555677*****988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-649105IPR001471AP2/ERF domain
CDDcd000182.26E-1149118No hitNo description
SuperFamilySSF541713.79E-1049117IPR016177DNA-binding domain
PROSITE profilePS5103216.18650116IPR001471AP2/ERF domain
SMARTSM003801.1E-550122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-950116IPR001471AP2/ERF domain
CDDcd000185.31E-13151247No hitNo description
PROSITE profilePS5103211.917152245IPR001471AP2/ERF domain
SMARTSM003808.9E-10152251IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-5220246IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-6220245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTNKKPTWSS SASACSGGSR IGLSCAVTNQ KRKKRARSDA VVLPSRGSSV YRGVSRHCAS  60
GKYEVHLWDR HYRSTVQNRR GRQGAYDTEE AAARTYDLAA LKYWGAQCGG LLLNFPVDTY  120
KDELERMQRV TREEYVAILR RDSSGFARGA SKYRGVAKHH KKGRWEARIG CGSGSGGGSK  180
RYLYLGIFSV FSIALSLQVR SITFLWLITR NGTLNLHAVT QEEAARAYDL AAIQLRGLAA  240
VTNFDVDSYC VDQQLQPPLC KVDLDPEPAG QLLLPKVEPK EEEPEPVPVL QDDVDCAIAE  300
VLQALCMDRA DFEARYPPRG APGRWLSDDD LRELPADMGF EDDIESVLFD APPAA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149714.10.0ethylene-responsive transcription factor WRI1-like
SwissprotQ84Z023e-58CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLN1QXT90.0N1QXT9_AEGTA; AP2-like ethylene-responsive transcription factor AIL5
STRINGEMT151110.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.19e-52AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]