PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT14851
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 331aa    MW: 35171.1 Da    PI: 6.5809
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT14851genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.62.7e-73803293256
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                +L +cAea+++gd + a   L++ +++ + +g   + + R+a++f+ ALa+rl+  +++ + +l +s+++      +   ++ f+++ P+lkf+h+taNq
  EMT14851  80 PVLHKCAEAIEAGDYAVAAGKLSEARTMLATSGsttTGIGRVASHFAAALAHRLFPASPHSSFTLDASPER------AGELYRQFYDAGPYLKFAHFTANQ 174
               5799************************666552235678****************777766666655555......5677999***************** PP

      GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
               aIlea+eg++rvH++D+ i+qG+QWp+L++aL+ Rp+gpps+RiTg+gs     + ++ e g rLa++A++++vpf+f+ ++ ++l++l++++++v pgEa
  EMT14851 175 AILEAFEGCDRVHVVDLAIKQGVQWPTLIHALSIRPGGPPSVRITGIGS-----APAVDEAGLRLAELARAMNVPFSFQRVTDDSLDQLKPWMFQVLPGEA 270
               *************************************************.....89************************9999***************** PP

      GRAS 202 laVnlvlqlhrll....desvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
               +aVn++ qlhrll    + s+sl+ ++d vL  + s++P+v++vveqeadhn++++ +r
  EMT14851 271 VAVNSICQLHRLLvdpdAASTSLPTPIDVVLGWIASMQPRVFTVVEQEADHNKPRLPTR 329
               *************5555555666669***************************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.43552331IPR005202Transcription factor GRAS
PfamPF035149.4E-7180329IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGHFALSWQG MEPAPAASLS GAGATLPLHS VQGPAAARNN DDASYCLDPA TYAPAVPPTI  60
AEAGAKRRQD AANIALYLIP VLHKCAEAIE AGDYAVAAGK LSEARTMLAT SGSTTTGIGR  120
VASHFAAALA HRLFPASPHS SFTLDASPER AGELYRQFYD AGPYLKFAHF TANQAILEAF  180
EGCDRVHVVD LAIKQGVQWP TLIHALSIRP GGPPSVRITG IGSAPAVDEA GLRLAELARA  240
MNVPFSFQRV TDDSLDQLKP WMFQVLPGEA VAVNSICQLH RLLVDPDAAS TSLPTPIDVV  300
LGWIASMQPR VFTVVEQEAD HNKPRLPTRC K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-328432125255Protein SCARECROW
5b3h_A2e-328432124254Protein SCARECROW
5b3h_D2e-328432124254Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161412.10.0DELLA protein SLR1-like
TrEMBLN1QVY00.0N1QVY0_AEGTA; Uncharacterized protein
STRINGEMT148510.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-52RGA-like 1