PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT14634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WOX | ||||||||
Protein Properties | Length: 285aa MW: 31693.8 Da PI: 9.5761 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.5 | 5.6e-14 | 44 | 102 | 5 | 57 |
SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHH.HHHHHC CS Homeobox 5 ttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNr.Rakekk 57 + +t+eq+++Le l+++ r+p+aee+ + +++l ++ ++V++WF Nr R+k+k+ EMT14634 44 WVPTREQITVLEGLYRQgMRTPTAEEIHQVTARLqehgPIEGKNVFYWFENRlRQKQKQ 102 899*************99****************99999*************9999986 PP | |||||||
2 | Wus_type_Homeobox | 87.3 | 1.7e-28 | 42 | 102 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + W Pt eQi++Le ly++G+rtP++eei+++ta+L+e+G ie+kNVfyWF Nr R++qkq EMT14634 42 ACWVPTREQITVLEGLYRQGMRTPTAEEIHQVTARLQEHGPIEGKNVFYWFENR-LRQKQKQ 102 67***************************************************7.5777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.53E-8 | 44 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-11 | 44 | 102 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 8.94 | 47 | 102 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MESVEHHDEA ATGLSLSPPP TSAPLSPLIS PNSAAVSALA NACWVPTREQ ITVLEGLYRQ 60 GMRTPTAEEI HQVTARLQEH GPIEGKNVFY WFENRLRQKQ KQQQQRSDYF ARQLRRPQPL 120 PTLRRTPGKP FSPVQLQAPP APNPPACNRE AMYMQQPCYM SGPAAQAAAN ATYYSQMQTH 180 IMYPTAEMMA HGNVQAQAQA AMYYQAASPN NSNTQQMRVL QFPPAAGSYG AHDAYSHRPV 240 LLNLFPQYPT FANRKKTRCV GSVGSARPST SRSISWEMES PKIPD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175042.1 | 0.0 | WUSCHEL-related homeobox 5-like | ||||
Swissprot | A2WWU7 | 8e-38 | WOX5_ORYSI; WUSCHEL-related homeobox 5 | ||||
Swissprot | Q8LR86 | 8e-38 | WOX5_ORYSJ; WUSCHEL-related homeobox 5 | ||||
TrEMBL | A0A453FWD7 | 0.0 | A0A453FWD7_AEGTS; Uncharacterized protein | ||||
TrEMBL | R7W9P1 | 0.0 | R7W9P1_AEGTA; WUSCHEL-related homeobox 5 | ||||
STRING | EMT14634 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7509 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-20 | WUSCHEL related homeobox 2 |