PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT14411

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 179aa MW: 20023.8 Da PI: 9.9594

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT14411	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00073	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H EMT14411 58 FSCNYCLRKFFSSQALGGHQNAH 80 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.69E-6	54	85	No hit	No description
PROSITE profile	PS50157	10.45	58	85	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MKRGPEAEEQ ILGKQGDEAG RADDNTSTPW LKLGLDALRS EAAKPPEAKP VATPQRTFSC 60 NYCLRKFFSS QALGGHQNAH KKERCAARRS RSFQQLMIRF PPTASFVQPM RASPHSTILT 120 AQGERAAVVV ARFHDGQMRN RMPFAVEEAA YFVWPGSFKA SLQEPMKQPE ENIDLSLHL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146214.1	1e-132	zinc finger protein 7-like
TrEMBL	A0A3B6D9G8	1e-131	A0A3B6D9G8_WHEAT; Uncharacterized protein
TrEMBL	A0A453B6U8	1e-131	A0A453B6U8_AEGTS; Uncharacterized protein
TrEMBL	R7W3I7	1e-131	R7W3I7_AEGTA; Zinc finger protein 7
STRING	EMT14411	1e-131	(Aegilops tauschii)
STRING	Traes_2DS_B06BAC02B1.1	1e-131	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1487	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	3e-20	zinc finger protein 7