PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT14086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HSF | ||||||||
Protein Properties | Length: 86aa MW: 9505.57 Da PI: 4.9085 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 79.2 | 6.8e-25 | 17 | 76 | 5 | 64 |
HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE CS HSF_DNA-bind 5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkk 64 +y++++d++++ ++sw +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+Y+ ++ EMT14086 17 TTYDMVDDPATDAVVSWGPANNSFIVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYERHR 76 68****************999***********************************9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.3E-19 | 10 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-14 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.8E-25 | 15 | 75 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.4E-21 | 17 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.06E-22 | 18 | 79 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.1E-14 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-14 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MDGGVAAAAA AAAAASTTYD MVDDPATDAV VSWGPANNSF IVWNTPEFAR DLLPKYFKHN 60 NFSSFVRQLN TYERHRPFDP ECHMLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-19 | 4 | 72 | 19 | 87 | Heat shock factor protein 1 |
5d5v_B | 2e-19 | 4 | 72 | 19 | 87 | Heat shock factor protein 1 |
5d5v_D | 2e-19 | 4 | 72 | 19 | 87 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208542 | 1e-85 | KF208542.1 Triticum aestivum heat shock factor A1b (HsfA1b) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943416.1 | 6e-33 | heat stress transcription factor A-1 isoform X1 | ||||
Refseq | XP_020528994.1 | 5e-33 | heat stress transcription factor A-1 isoform X2 | ||||
Swissprot | Q84T61 | 3e-31 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | N1QV69 | 1e-57 | N1QV69_AEGTA; Uncharacterized protein | ||||
STRING | EMT14086 | 2e-58 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 1e-31 | heat shock factor 1 |
Publications ? help Back to Top | |||
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