PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13935
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bZIP
Protein Properties Length: 337aa    MW: 35959.1 Da    PI: 6.3993
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13935genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.12.9e-16160214360
               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
               ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L + N    +  ++l++  ++ +
  EMT13935 160 DVKRMRRMVSNRESARRSRKRKQAHLVELETQVDQLRGDNA---SIFKQLTDANQQFT 214
               579*************************************7...66677777777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-17158222IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.703160212IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.35E-12161213No hitNo description
PfamPF001705.4E-14161212IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.3E-12162213No hitNo description
CDDcd147023.77E-22163213No hitNo description
PROSITE patternPS000360165180IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MKKCASELEL EAFIRGRGPP PPRKTPRAPP RGPYGLFSAA DLSSAFGFAD SALNGTIQNH  60
LWPQSPNLGA RHPAVSTTIE SQSSFYGNTP NIVPLPQFST QLQHMTVEFS IYAAAASPTS  120
ATNLSIKESQ AFGGTSGSDS DSESMFDDGG LCDNGTNPTD VKRMRRMVSN RESARRSRKR  180
KQAHLVELET QVDQLRGDNA SIFKQLTDAN QQFTTAVTDN RILKSDVEAL RVKVKLAEDM  240
VARGAMSCGL GHLGLSPAAL NPCRVPDVLA GLDFLPGGAD DACFGSLSPA EQVQSSPMQS  300
MASLESLEHS SRMQHGGGAD AVDVWGWDSS SNGAMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180RRSRKRK
2174181RRSRKRKQ
3176181SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3542770.0AK354277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006E09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186609.10.0basic leucine zipper 63-like isoform X2
SwissprotQ6ETX01e-122RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLN1QWG70.0N1QWG7_AEGTA; Light-inducible protein CPRF2
STRINGEMT139350.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-41basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]