PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13199
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 1101aa    MW: 122657 Da    PI: 8.0695
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13199genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.86.8e-12101510931391
                TT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
        B3   13 sgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91  
                + rl lp +  ++           +  ++l+d+  r W v +    +s  + +t+GWk+Fv an+L++gD +v+ +d + +e  
  EMT13199 1015 QTRLELPDPLSNAVgrkgR---LDQNIVMLKDPMKRLWPVFY--HETSLFVGFTGGWKSFVAANKLEAGDLCVLLMDLDeDELV 1093
                4567777777766654322...23457999************..******************************9875534444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.841471566IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-13474566IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.018474566IPR003340B3 DNA binding domain
CDDcd100172.21E-8474563No hitNo description
Gene3DG3DSA:2.40.330.103.0E-12483566IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-7486563IPR003340B3 DNA binding domain
PROSITE profilePS5086311.13810031101IPR003340B3 DNA binding domain
SMARTSM010191.8E-510051097IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1210081097IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-1210091096IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-910151092IPR003340B3 DNA binding domain
CDDcd100172.66E-1110171100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1101 aa     Download sequence    Send to blast
MRESHHHHRH HAVVLTKLSL APLLDQEFEG RHRAERVLNS ELLEGSEHAL DTLYVATAGP  60
MSYQQSRTRA GVVLVPKPSV PHFGVDGVPE VVVQVVRQEA ASAVDLLAVG TAAHWGRRDR  120
HSIRGQMPVI GQEAAGPEWE HGLTGRRFPI KKDGDRLPGR MTGGADCACP INLNGGRRRE  180
RMSSGELARQ DRSRSRDTEM ECEEEEEEED ETCKMLSEEE EQEVEMWDKK VQSRKASTGS  240
LEKGRRMEEP IELSDDADDN ETIMEMSKKA AKHKEKKRRH NDDGDHKKKK KKSVSSHGGD  300
KNTHSADRDK DMRRDMLLSP NKNKGPFHSK EKSWKMPSSH GGDRKMHRGG HHNDNKSSMM  360
WRSEYDKYKG MKKKEMNKDK KPWPVHNGGS REEKKKTALF LSKEGKMPML DDSSNKGNKR  420
KKMPMMYDKV KKPRTSDKDD KAGSYDRKKT TLGYNAGQKV QSGHGEEKKV KFAFFKVAGE  480
HFEEFLLIPP KPAGAPKMVG LTNQLVCLED SEGKSSMVRL SVVDGSLAFY QGWSNFVSDH  540
SIKWAEIILF EYTGCSKFSV RVFGADSWER VSFIVETRGE EKKQKESYAP DDLVPCRCSR  600
DINGHHYVSG EYIGSNRTKT KSDGYTDNAE VSPSNLVAKS MSAVPGTCRM SANSTQDPNG  660
VVGGIVCGSS VAPDNKDGHL ANRKHTANAI FPSYIKDTTR SPEIIVMADE APLAQENKDT  720
VALDNKKENL SIGECKTKCN ASVTCNNEKT TRLELVPVTT DAAPLSQENG DAVELTTFVG  780
HIEDSVMMKE STSAKCAEIH GSDEDLRRKQ EGNTVRLECT AAVDKFPSNN KMDTNGNACS  840
KYEYPGSFQC LEKWKGATVS GREALDGTGL IRPEKRLKTE EKLVGAMGVN PVERGYDGTH  900
SCVPSQISES GLTRTKIEHS VNGKGATGKP ETKIEQVGTV ESIGCRQERN NISISANRAV  960
ARQTEHHFFR KEDTKSSNPA PPVPLLPVKV EVSELDDHRP VLKANLQFVV PSTAQTRLEL  1020
PDPLSNAVGR KGRLDQNIVM LKDPMKRLWP VFYHETSLFV GFTGGWKSFV AANKLEAGDL  1080
CVLLMDLDED ELVYDVEITR K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276291KRRHNDDGDHKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-70HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196102.10.0B3 domain-containing protein Os02g0598200-like
RefseqXP_020196103.10.0B3 domain-containing protein Os02g0598200-like
TrEMBLR7W7F70.0R7W7F7_AEGTA; B3 domain-containing protein
STRINGEMT131990.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-07B3 family protein