PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT13166

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Protein Properties

Length: 302aa MW: 32955.3 Da PI: 6.1776

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT13166	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.6	1.3e-14	187	275	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f +l++s+v k +l++p +f +h ++++s tl+ +grsW +++ ++ ++ l + W +F+ +n+L+++D +vF+l+ +++e v++ EMT13166 187 FTIILSRSHVQKPFQLYIPGRFH-KHLPEERTSATLI---CRGRSWAMRY--CGDLKTKRLDADWMDFAVDNRLQVNDACVFELVTGTREEVVFQ 275 677899**************9.5533334444444...489***..77777777*********************995444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.65E-17	183	278	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-19	183	280	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.29E-20	185	280	No hit	No description
SMART	SM01019	4.4E-7	187	282	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-12	187	277	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.702	187	282	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MAAASTEPAL PGGSPADEDA EAVVASDELR HLPDQALQAR LQRMQASIHG GIAARLPDGG 60 RTYRRKLLAV RRELERRKGQ APALPATAPH SPSPLPSSQH PPPCQGGPPD DVGCKHIVES 120 SDVQGTSSLP DQVKDEQMET PVCPSKQLPD AHIIKPKVEP CDDTLSPAPD ASEDCETTPL 180 SCSHPFFTII LSRSHVQKPF QLYIPGRFHK HLPEERTSAT LICRGRSWAM RYCGDLKTKR 240 LDADWMDFAV DNRLQVNDAC VFELVTGTRE EVVFQVQILR GGLPKDITSK GYTADEPLVI 300 VG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175391.1	0.0	B3 domain-containing protein Os06g0112300-like
Swissprot	Q9LHY9	2e-46	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	R7W235	0.0	R7W235_AEGTA; B3 domain-containing protein
STRING	EMT13166	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	7e-08	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]