PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT12195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 29572.3 Da PI: 6.5186 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.8e-13 | 142 | 188 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT+eE+ l++++ G g Wk I++++ + Rt+ q+ s+ qky EMT12195 142 KGFWTPEEHRLFLHGLSVCGRGKWKEISKYFVTSRTPAQISSHAQKY 188 688*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.613 | 137 | 193 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.83E-16 | 140 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-10 | 141 | 191 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 142 | 188 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.2E-10 | 143 | 188 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 8.1E-13 | 144 | 191 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.24E-8 | 145 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MNQRVNQEWN PSEVEGARSI IARLNNYYNN DGTNHEKNKK HDIMANLKAC FPRKTMQQWP 60 EKEYNGSNSD HGVIYTVDGL VNKNFGLQEE VSMEGMGILF GLPLESMQTM EIQEEVQMVE 120 ENKVVLENKM CIPQPVLAPR AKGFWTPEEH RLFLHGLSVC GRGKWKEISK YFVTSRTPAQ 180 ISSHAQKYFM RLQRKGSGSQ RYSINDVELD DAGPWKMENS FNFWQELALQ STTGGDNKNP 240 SFDLQTPSSP FVTMNNIV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156757.1 | 1e-174 | uncharacterized protein LOC109742093 | ||||
TrEMBL | M8BES1 | 0.0 | M8BES1_AEGTA; Myb-like protein J | ||||
STRING | EMT12195 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 1e-20 | MYB_related family protein |