PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT11934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 399aa MW: 44588.7 Da PI: 7.9001 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0014 | 94 | 116 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ +Cgk+F + L++H +H EMT11934 94 CSydNCGKTFVDVAALRKHAHVH 116 88889**************9887 PP | |||||||
2 | zf-C2H2 | 20.3 | 1.4e-06 | 121 | 145 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH tH EMT11934 121 YVCQepGCGKKFVDSSKLKRHHLTH 145 99********************999 PP | |||||||
3 | zf-C2H2 | 12.4 | 0.00048 | 195 | 219 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk+F++ Lk Hi+tH EMT11934 195 HICPfpACGKRFTSDFKLKCHIKTH 219 5799999*****************9 PP | |||||||
4 | zf-C2H2 | 16 | 3.4e-05 | 265 | 290 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp Cgk + + + L+ H++t H EMT11934 265 YVCPyeGCGKAYIHGYKLNLHLKTqH 290 99*********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-12 | 88 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.014 | 92 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.094 | 92 | 121 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.69E-5 | 93 | 117 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.11E-9 | 111 | 158 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-13 | 119 | 141 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.129 | 121 | 150 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.7E-4 | 121 | 145 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 123 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.1E-8 | 142 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 83 | 151 | 189 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.06E-9 | 175 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-10 | 181 | 220 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.073 | 195 | 219 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.91 | 195 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 197 | 219 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-9 | 258 | 288 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.1E-6 | 260 | 289 | No hit | No description |
PROSITE profile | PS50157 | 9.577 | 265 | 295 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0077 | 265 | 290 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 267 | 290 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MEYAAAGAGG YYYYPPAQQP QPPPQTLRRR PRPAARWVKQ WIPQDLASPG SKCALFKWVR 60 EDVYKNLKEN GGAGQEPEAQ PRKVEPATEI LFLCSYDNCG KTFVDVAALR KHAHVHGERQ 120 YVCQEPGCGK KFVDSSKLKR HHLTHTGQKD FVCPHPGCEV YFLLRHNFMF ASLQAFSLDF 180 NLRAHLKTHA VENYHICPFP ACGKRFTSDF KLKCHIKTHE KTGSPIAVQH TPPAEKPQST 240 IKPSIQATPK PSAPTPPSFS SERPYVCPYE GCGKAYIHGY KLNLHLKTQH PDHNQENNGR 300 SATPAAGYNY ADGGDIAPNP KRSKTNQGHR APPSNAYNVK VSSRMAVDTS GAKNQWPGKG 360 MYDDDSEETE EDPGGNNVED GWRYGNQNAD DEETEEDED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 3e-29 | 84 | 221 | 1 | 119 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359191 | 0.0 | AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180408.1 | 0.0 | uncharacterized zinc finger protein At4g06634-like | ||||
TrEMBL | M8BYM8 | 0.0 | M8BYM8_AEGTA; Putative zinc finger protein | ||||
STRING | EMT11934 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 3e-93 | C2H2 family protein |