PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11356
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family AP2
Protein Properties Length: 298aa    MW: 32311 Da    PI: 6.239
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11356genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.8e-1397147155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
               s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  EMT11356  97 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 147
               89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.414162IPR001471AP2/ERF domain
SMARTSM003802.4E-42868IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-63363IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-83363IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-1797156IPR016177DNA-binding domain
PfamPF008475.3E-997147IPR001471AP2/ERF domain
CDDcd000188.03E-2897157No hitNo description
PROSITE profilePS5103216.25298155IPR001471AP2/ERF domain
SMARTSM003806.2E-3398161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1698156IPR001471AP2/ERF domain
PRINTSPR003676.8E-799110IPR001471AP2/ERF domain
PRINTSPR003676.8E-7137157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVLDLNVESP ADSGTSSSSV LNSADAGGGG GSGGFDTAHA AARAYDRAAI KFRGLEADIN  60
FNLSDYEEDL KQMRNWTKEE FVHILRRQST GFARGSSKYR GVTLHKCGRW EARMGQLLGK  120
KYIYLGLFDS EVEAARAYDR AAIRFNGREA VTNFESSSYN GDAPPDAENE AIVDADALDL  180
DLRMSQPTAH DPKRDNIIAG LQLTFDSPES STTMLSSQPM SSSSSQWPVH QHGTAVAPQQ  240
HQRLYPSACH GFYPNVQFIP EIKVYMFLSL VKLIMPALLK TSTSAGAGAG EAHGAKAP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6970020.0AB697002.1 Triticum aestivum q mRNA for transcription factor WAP2D, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154435.11e-166AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AMA91e-114AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB51e-114AP22_ORYSJ; APETALA2-like protein 2
TrEMBLM8BBJ20.0M8BBJ2_AEGTA; Floral homeotic protein APETALA 2
STRINGEMT113560.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-65related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]