PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11121
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 265aa    MW: 29258.4 Da    PI: 6.7828
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11121genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS98.31.2e-30101231113
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
               lv+lLl+cA++vs+gd+  a + L  l+  asp gd+mqR+a+yf+ ALa+rl+  s++ ++   +  + +   s ++l++++++++++P++kf+h+taNq
  EMT11121  10 LVHLLLACADFVSKGDQPSALRHLHLLRRVASPLGDSMQRVASYFADALATRLSVsSGTAISPRGAGAPYPFPPSPDTLKIYQILYQACPYIKFAHFTANQ 110
               68***************************************************9845555555444444444459************************** PP

      GRAS 101 aIleavegeervH 113
               aI ea++ge+rvH
  EMT11121 111 AIFEAFHGEDRVH 123
               ************* PP
2GRAS177.51e-54125264236374
      GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
               Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p++s  r+kvE+ ll++ei+nvvacegaer++rhe+l +Wr+ +e+ GF++vpls  a+ q
  EMT11121 125 PKIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAPRMKVEQCLLAPEIRNVVACEGAERVARHERLDRWRRIMEDRGFEAVPLSPAAVGQ 225
               9**************************************************************************************************** PP

      GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                + ll  ++ +dgyr++e++g+l+lgW+dr+++ +SaWr
  EMT11121 226 SQVLLGLYGaGDGYRLNEDKGCLLLGWQDRAIIGASAWR 264
               **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.8051243IPR005202Transcription factor GRAS
PfamPF035144.0E-2810123IPR005202Transcription factor GRAS
PfamPF035143.5E-52125264IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQEQDSGLQL VHLLLACADF VSKGDQPSAL RHLHLLRRVA SPLGDSMQRV ASYFADALAT  60
RLSVSSGTAI SPRGAGAPYP FPPSPDTLKI YQILYQACPY IKFAHFTANQ AIFEAFHGED  120
RVHAPKIMTL VEQEAGHNGP YFLGRFLEAL HYYSAIFDSL DATFPADSAP RMKVEQCLLA  180
PEIRNVVACE GAERVARHER LDRWRRIMED RGFEAVPLSP AAVGQSQVLL GLYGAGDGYR  240
LNEDKGCLLL GWQDRAIIGA SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-34226310378Protein SCARECROW
5b3h_A2e-3422639377Protein SCARECROW
5b3h_D2e-3422639377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363776e-81AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377596e-81AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149676e-81AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178448.13e-96DELLA protein RGL1-like
SwissprotG7L1662e-77RAM1_MEDTR; GRAS family protein RAM1
TrEMBLM8BAT70.0M8BAT7_AEGTA; Uncharacterized protein
STRINGEMT111210.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-42RGA-like 2
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]