PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11118
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 384aa    MW: 42322.3 Da    PI: 4.6441
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11118genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.91.5e-141561349
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              i n+  r  tf kRr g++K A  +S L+ a+vav++  ++gk++ +
  EMT11118 15 IHNDKERDLTFYKRRSGLFKRATDISALTRARVAVVLETNNGKMHSF 61
              89*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-8364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.213565IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-9727IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-15874IPR002100Transcription factor, MADS-box
PfamPF003192.3E-151561IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-92742IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-94263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MCMPRKERRS GVAYIHNDKE RDLTFYKRRS GLFKRATDIS ALTRARVAVV LETNNGKMHS  60
FGTPLADPIV DAFLFGAPLA VPFADEATTA RIGSLQNEVA QLDMENMTEE DKNKLSILRM  120
KNIQEENPGM VANLIFTKEK DLSLEDLNKL FSELSRVLKD IRFRLPPLHG REDKTGSTSV  180
AQDLQLPSVP PADHLGTTHS LMQSSWPHNL SQLQIPSDPL PSQPEQTSAP LFPMQAPQML  240
HSAPPSLAPH LASHVQPIPN QVHEQTPPEE LHVQNYESPC NIVQPQENDA NHDSTSGQNF  300
EASPLLGYSS GNAFSIDDPF NTEQWGYALS DQSYYNSFLG MDAYLGSSGT DLGQSSMVNG  360
GWVDVPPSST GQDIDILTDC GEVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160767.10.0floral homeotic protein APETALA 1-like
TrEMBLM8C7M20.0M8C7M2_AEGTA; MADS-box transcription factor 8
STRINGEMT111180.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.14e-11AGAMOUS-like 28