PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11116
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 292aa    MW: 32611.4 Da    PI: 7.5711
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11116genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-144692349
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              i n+  r  tf kRr g++K A  +S L+ a+vav++  ++gk++ +
  EMT11116 46 IHNDKDRDLTFYKRRSGLFKRATDISALTRARVAVVLETNNGKMHSF 92
              89*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.3393696IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-83695IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-93858IPR002100Transcription factor, MADS-box
CDDcd001208.60E-123995No hitNo description
SuperFamilySSF554557.19E-1539105IPR002100Transcription factor, MADS-box
PfamPF003191.5E-154692IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-95873IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-97394IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLFANSTCKS LVLCRYLCFL FVVVSFYLFV HISIPRKERR SGVAYIHNDK DRDLTFYKRR  60
SGLFKRATDI SALTRARVAV VLETNNGKMH SFGTPLADPF VDAFLFGAPP AVPSANEATT  120
TRIGSLQNEV AQLDMENMTE EDRNQLSILL MKSIQEENPS MVANLIFAKE QDLGLEDLNN  180
LLSELSRVQK DIRCRLPPLH GREAKTSATC VAQDLQLPSV LPTDHLGTTH SLMQSSWPHN  240
LSQLQPPADP LPSQPEQTSA PLFPMQVPQM FDFAPPSLAP HTSRKRGFYP GS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160768.10.0pheromone receptor transcription factor-like
TrEMBLM8BAT00.0M8BAT0_AEGTA; MADS-box transcription factor 8
STRINGEMT111160.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-09AGAMOUS-like 71