PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10553
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20989.6 Da    PI: 10.3777
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10553genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.73.5e-141151343
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
              i n+s r  t+ kR + ++KKA+E+ +LC+a+++v+++++ 
  EMT10553 11 IRNDSTRLNTLKKRTKNLMKKASEVATLCNAKACVLVYGEG 51
              89************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-14160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.629161IPR002100Transcription factor, MADS-box
CDDcd002661.50E-18261No hitNo description
PRINTSPR004041.9E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-18394IPR002100Transcription factor, MADS-box
PfamPF003193.3E-121150IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MARKKVDLRY IRNDSTRLNT LKKRTKNLMK KASEVATLCN AKACVLVYGE GTMVPEVFPS  60
HAEAVAILNQ FKSIPEVPQL KKTMDQETIL SKRLVQLRHQ VEKIRRERED REARILLHKA  120
MVSGHLPGNI EELTTMEWKL ELILKSLGER ITKRSGQPPV YQAQAPYVTG GMDMGSSMYQ  180
ALQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166794.11e-134agamous-like MADS-box protein AGL80
TrEMBLM8C5Y31e-134M8C5Y3_AEGTA; Agamous-like MADS-box protein AGL80
STRINGEMT105531e-135(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-20AGAMOUS-like 80