PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT10156 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 375aa MW: 41103.8 Da PI: 6.8814 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 113 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdps+ +r++lg+f +aeeAa+a++ +++++g EMT10156 113 QFRGIRQRP-WGKWAAEIRDPSK---GARVWLGTFNSAEEAARAYDVEARRIRG 162 69*******.**********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.96E-21 | 113 | 171 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.29E-30 | 113 | 170 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-31 | 113 | 171 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-36 | 113 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 113 | 170 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-11 | 114 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MCGGAPLADV KVPTVTRKMT KATLWHEKKK PRHGGSGGRH FTGLGGRRGP GLDDNEEDFE 60 ADSGDSDLEL ERTMVDEKDD DDEVVEIKSF AAVKRSLSQG FDGPSAKRKR KNQFRGIRQR 120 PWGKWAAEIR DPSKGARVWL GTFNSAEEAA RAYDVEARRI RGNKAKVNFP KESTVPQKRR 180 ARPAAPNAPK LSVAQEPSVM PSINNLANPN AFIYPSATFA SNQPLALPDN MSFVPAMNST 240 APVEAFVMNP YSHQGSNSFG CSDLEWDYDT KTPDIPSIAP ISTIAEGAEF ALAQSNAYNS 300 VVITEAAESA LAQSNTHNSV VPHVIENNDV DFEAWTRMSL STWTSGASMT CPCVANFYEG 360 FTHVYRDKRN KTMGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 112 | 170 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 113 | 170 | 5 | 63 | ATERF1 |
3gcc_A | 2e-20 | 113 | 170 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ647357 | 0.0 | HQ647357.1 Hordeum vulgare subsp. vulgare cultivar Morex AP2/EREBP-like protein gene, complete cds. | |||
GenBank | HQ647358 | 0.0 | HQ647358.1 Hordeum vulgare subsp. vulgare cultivar Steptoe AP2/EREBP-like protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195166.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-102 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M8B834 | 0.0 | M8B834_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | EMT10156 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 9e-34 | ERF family protein |