PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT09911

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NF-YC

Protein Properties

Length: 265aa MW: 29345.6 Da PI: 4.7909

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT09911	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	38.8	2e-12	12	62	23	73
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrt 73 + rikki++adedv +i+ +Pvl+ska elf+ +l r+++ + e+ +t EMT09911 12 MPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITVEKGVKT 62 56****************************************999987776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.19E-10	13	65	IPR009072	Histone-fold
Pfam	PF00808	2.7E-11	13	62	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.8E-17	14	62	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MADSYYFSDG IMPRIKKIMQ ADEDVGKIAL AVPVLVSKAL ELFLQDLCDR TYNITVEKGV 60 KTNVASKVPD LGAPDSSVDD KLGKRRKHGE DESEEESKRT RNEAACHTSN GRGRGRGRGR 120 GRRAGRGAER EIEHHELGCA QFSKPGHLKV EIGDVVLDTS ETKEHTPLSN ARASLRNIDL 180 NLDLADYEED TPQVQPSAPS APVVTVAPQV QTSGPSVSQL KEEVETKDFL GWQMPEMNKM 240 AMDPVQFALS SNHRLEEDED YDNEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	120	RGRGRGRGRG
2	111	121	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK250593	0.0	AK250593.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf92h11, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194314.1	1e-155	dr1-associated corepressor homolog isoform X1
TrEMBL	M8B7D9	0.0	M8B7D9_AEGTA; Dr1-associated corepressor
STRING	EMT09911	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-27	nuclear factor Y, subunit C11