PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT09804 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 28718.3 Da PI: 5.8982 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.4e-09 | 33 | 56 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia++++ gRt++++k++w+ + EMT09804 33 RWSLIASHLP-GRTDNEIKNYWNAH 56 5*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.679 | 1 | 57 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.75E-8 | 29 | 60 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-13 | 31 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-7 | 32 | 57 | No hit | No description |
Pfam | PF00249 | 2.5E-7 | 33 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF06640 | 3.3E-4 | 75 | 114 | IPR010588 | Myb-related protein P, C-terminal |
Pfam | PF06640 | 1.8E-21 | 131 | 259 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKNNMLVILL RLHIVQFKYL SLTSMHLLEL ADRWSLIASH LPGRTDNEIK NYWNAHLSRR 60 SHSFRHTHTA GKETTITIDI NKISATSKRR GGRAPRSSMK KQPVPEPTKS TESSSPVPAI 120 SSSTSSLPQG YSDKNQPINS IPNDMPCSDH VDLNGGVLKP NYAKDSMNQI GILEEESEIE 180 GLLSSMDDMP ASGLNGLQHG GHLPLVEDLL DMDWEGFATH LWDQPAQSDQ LQPAEPQATM 240 GSVSDELESF VHWLLSDTC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159331.1 | 1e-174 | transcription factor MYB12-like | ||||
TrEMBL | M8BSM5 | 0.0 | M8BSM5_AEGTA; Myb-related protein P | ||||
STRING | EMT09804 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 9e-19 | myb domain protein 12 |