PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT09301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | G2-like | ||||||||
Protein Properties | Length: 303aa MW: 33433.9 Da PI: 9.1674 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.1 | 1.7e-32 | 79 | 133 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl EMT09301 79 KQRLRWTSDLHSRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 133 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.171 | 76 | 136 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 77 | 134 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-16 | 78 | 133 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-25 | 79 | 134 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.2E-7 | 81 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.1E-24 | 169 | 214 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGGCFAQRFC RPSGRDRGSV RRIAVELRVR GRTLMMYHAK KFSVPFAPQR AQNSEHVSNI 60 GAFGGSNISN PANPVGSGKQ RLRWTSDLHS RFVDAIAQLG GPDRATPKGV LTVMGVPGIT 120 IYHVKSHLQK YRLAKYIPES PAEACVGSKD EKKDSSDSFS NADSAPGSQI NEALKMQMEV 180 QKRLHEQLEV QKQLQLRIEA QGKYLQMIIE EQQKLGGSLE GSEERKLSHS PPTLDDYPDS 240 IQPSPKKPRL DDLSTDAVRG VAQPGFESHL VGPWDQELCP KTNICDPAFQ VDEFKANPGL 300 SKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-22 | 78 | 136 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-22 | 78 | 136 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-22 | 78 | 136 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-22 | 78 | 136 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-22 | 78 | 136 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-22 | 78 | 136 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-22 | 78 | 136 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-22 | 78 | 136 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY625680 | 0.0 | AY625680.1 Triticum aestivum MYB transcription factor (MYB80) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198211.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-67 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | M8B5R0 | 0.0 | M8B5R0_AEGTA; Myb family transcription factor APL | ||||
STRING | EMT09301 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-62 | G2-like family protein |