PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09249
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 172aa    MW: 19594.8 Da    PI: 4.4009
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09249genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.9e-1413792999
              -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               ++   +++le +++++ ++++  +k ++  v+++GW+ F++a +L++gD+++F+++g+s+f   v++f++
  EMT09249 13 RERIADEVKLEVPDSKTSNIRV--SKEGNDLVFQSGWETFASAYELEQGDILLFEYSGSSRF--DVRIFDQ 79
              4556679***************..*********************************99999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.138180IPR003340B3 DNA binding domain
SMARTSM010190.0049380IPR003340B3 DNA binding domain
CDDcd100175.21E-151078No hitNo description
PfamPF023621.3E-111279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-171492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-151582IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MMFENLWLAN NIRERIADEV KLEVPDSKTS NIRVSKEGND LVFQSGWETF ASAYELEQGD  60
ILLFEYSGSS RFDVRIFDQS CCEKELSCVT MNNTSCVNER DMSQDNHMQS PRNESEVTST  120
KLFSVYKRKG DCTGGNYVPV YLEGDGISNQ NLKNHDLVVK STYDYGMFMA LG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161799.16e-38B3 domain-containing protein LOC_Os12g40080-like isoform X1
SwissprotQ2QMT71e-35Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLM8BR771e-126M8BR77_AEGTA; B3 domain-containing protein
STRINGEMT092491e-126(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-13B3 family protein