PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08668
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 531aa    MW: 58003.9 Da    PI: 8.1757
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08668genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-0783103526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               +C++f++ G C++Gd C +aHg
  EMT08668  83 PCPDFRK-GVCRRGDMCEYAHG 103
               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-578104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-581105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.37583105IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-583103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4111141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.822113137IPR000571Zinc finger, CCCH-type
SMARTSM0035666113136IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MMMSKFPDLP RVATSEKKEY PVDPSLPDIK NSIYASDEFR MYSFKIRPCS RAYSHDWTEC  60
PFVHPGENAR RRDPRKYHYS CVPCPDFRKG VCRRGDMCEY AHGVFECWLH PAQYRTRLCK  120
DGTGCNRRVC FFAHTTDELR PLYVSTGSAV PSPRASATAA MEMAAAMGLM PGSPSSVSAV  180
MSPFTPPRSP SGNGMPPSLG WQQPNVPTLH LPGSSLQSSR LRSSLNARDM PMDDYSLLQD  240
IDSQLINDLC YSRLGSSAGG NHSSRTKSLN PSNLDDLFSA EMVSSPRYNN ADQGAMFSPS  300
QKAAILNQFQ QQQQLLSPIN TGFSPKAVDN QQLHSRSSLL QASLGISSPG RMSPRCVESG  360
SPMNSHLAAA LAQREKQQQQ QHQQHQQTMR SLSSRDLGPS AARASAAVGS PLSSSWSKWG  420
SPSGAPDWGV NGEELGKLRR SSSFELRSGG DDPDLSWVHT LVKESPPEKQ VTTAESINNS  480
VRPSPQMHPS VSNGEGSSVS TQLNRHDQAA VIGALLEQMQ LDEQIGSLAA T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753040.0AK375304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3090H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195419.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A453H5130.0A0A453H513_AEGTS; Uncharacterized protein
TrEMBLI3NM390.0I3NM39_WHEAT; Zinc finger CCCH domain-containing protein
STRINGEMT086680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-161CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]