PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08561
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 586aa    MW: 63945.1 Da    PI: 7.3643
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08561genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.3e-1044105157
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETT CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksg 57 
               f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr+ +g
  EMT08561  44 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLHGTQWRFRHIYRGERG 105
               99****************************97444.34579*****************77665 PP
2Auxin_resp1027.6e-34142223183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 +a++++++s+F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + +++d++er+ +G+++g+s++dp+rWp+SkWr+L+
    EMT08561 142 VASSLENRSIFHVCFDPRSGASEFIVPYWRFSKSLNHPFSIGMRFKDSNDSDDANERS-TGLISGISEVDPIRWPGSKWRCLQ 223
                 578899***************************************************9.9**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-2833108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-2040104IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-942105No hitNo description
PfamPF023622.8E-844106IPR003340B3 DNA binding domain
SMARTSM010190.007144142IPR003340B3 DNA binding domain
PfamPF065071.2E-27143223IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MEQYPCELAN KMFRQNVRES ASEEGEDEMA GGDGEKKPRM PHMFCKTLTA SDTSTHGGFS  60
VPRRAAEDCF APLDYKQVRP SQELVAKDLH GTQWRFRHIY RGERGDDGEL RLGVRRAVQL  120
RNEALFRAVN SNESKLHTLS AVASSLENRS IFHVCFDPRS GASEFIVPYW RFSKSLNHPF  180
SIGMRFKDSN DSDDANERST GLISGISEVD PIRWPGSKWR CLQYFRDQVR WDDGNHCNHQ  240
RRVSPWEIER IGGSIQVNDC LSASSSKRAK LYFPQGNLDA PVTDGNDFPD PVETGSFHRV  300
LQGQELLMGS RAQGAARSRS PDVAKFRPPD HQRFSANAGS YMPQQSPAEF PYHSSGFGES  360
LGFPEVLQGQ EMSRALRFYS QGSAFDARAQ HGPFGYAQRS AAPGGLSPAA QGYALGQFTP  420
SSAAAKVSSP SSVLMFNQAT VPQFDLEGRT SGYRGAYGGQ CPPGIEMVRE TEEAWPCAQR  480
RTPSVTGTGC RRFEEWIMAS TPARADGGRP RSAAAGDVVG RRSCRLVGVS LTDQKGLGGA  540
GEGAAKEGDA ADEAVEGADP RGLDLFGRGH PAPAALHAIV AAPLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-4834249150388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188126.10.0auxin response factor 14-like
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLM8B3I20.0M8B3I2_AEGTA; Auxin response factor
STRINGEMT085610.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.12e-93ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]