PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT08106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 416aa MW: 45763.4 Da PI: 8.1743 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.5e-17 | 84 | 128 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++G W++I +++g ++t+ q++s+ qk+ EMT08106 84 REKWTEEEHKRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 128 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.91E-16 | 78 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.542 | 79 | 133 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.5E-16 | 82 | 131 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.3E-13 | 83 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 84 | 124 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-15 | 84 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.15E-10 | 86 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAMFVAPERL SLGQVHKDFP AVIDKVRPAP AWERRHRRWP ENAMATDEST ADHRGSRPSS 60 HDMDLSGDDH VPKARKPYTI TKQREKWTEE EHKRFLEALQ LHGRAWRRIQ EHIGTKTAVQ 120 IRSHAQKFFS KASEFTANGD VKEGSCTGSA TSVLKLFGKK VVVNDSFQKP NTSTGNPQNG 180 GDVGTEASDD TTTQGSRNLP SGGATEGSSW NPWPSSMQQF VYFVPQPDGF ATQSAVPWFG 240 TLPGAMFYQQ AMAPNQHQRH RSETADHKFM QREGSWTGSN TGPGSAAHNS DAADSRGRGN 300 SSESDKTPVP RLTKCESSVS VSLQRGFMPY KRCAAESESL RSEAPREETD APTGLGRRQQ 360 AAQVRHATEG RCVAVELCES GEELAGRGSF KTSRSDQEGN ANESTLQTCI RVLTSE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009406 | 0.0 | BT009406.1 Triticum aestivum clone wlm96.pk054.b21:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193937.1 | 1e-157 | protein REVEILLE 1-like | ||||
TrEMBL | M8B273 | 0.0 | M8B273_AEGTA; Myb-like protein G | ||||
STRING | EMT08106 | 0.0 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-35 | MYB_related family protein |