PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07543
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 321aa    MW: 34673.1 Da    PI: 5.0083
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07543genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.52.7e-83828134312
      GRAS  34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLas 134
               + + + R+a++ft ALa+r++  +++ + al +s+++      +   ++ f+++ P+lkf+h+taNqaIlea+eg++rvH++D+ i+qG+QWpaL+qaL+ 
  EMT07543   8 TTTGIGRVASHFTAALAQRIFPASPHSSFALDASPER------ARELYRQFYDAGPYLKFAHFTANQAILEAFEGCDRVHVVDLAIKQGMQWPALIQALSI 102
               457889****************777777777766665......4456889*************************************************** PP

      GRAS 135 RpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll....desvsleserdevLklv 231
               Rp+gpps+RiTgvgs     + +  e+g rLa+fA++++vpf+f+ ++ ++l++l++++++v pgEa+aVn++ qlhrll    + s+sl+ ++d vL  +
  EMT07543 103 RPGGPPSVRITGVGS-----APAADEVGLRLAEFARAMNVPFSFQRVTDDSLDQLQPWMFQVLPGEAVAVNSICQLHRLLvnpdAASTSLPTPIDVVLGWI 198
               ***************.....899***********************9999*****************************96666566777779******** PP

      GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.eerikvErellgreivnvvacegaerrerhetl 312
                s++P+v++vveqeadhn++ +++rf +a+ yy +++ds+ +++++r     +     ++++rei n+v+ eg++r+erhe l
  EMT07543 199 ASMQPRVFTVVEQEADHNKPGLVTRFDNAMFYYGSVLDSMeAMSVSRGGaIGNGAGADAYVQREIFNIVCYEGSARTERHEPL 281
               ****************************************66677776654455566778*********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.1451321IPR005202Transcription factor GRAS
PfamPF035149.4E-818281IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLATSISTTT GIGRVASHFT AALAQRIFPA SPHSSFALDA SPERARELYR QFYDAGPYLK  60
FAHFTANQAI LEAFEGCDRV HVVDLAIKQG MQWPALIQAL SIRPGGPPSV RITGVGSAPA  120
ADEVGLRLAE FARAMNVPFS FQRVTDDSLD QLQPWMFQVL PGEAVAVNSI CQLHRLLVNP  180
DAASTSLPTP IDVVLGWIAS MQPRVFTVVE QEADHNKPGL VTRFDNAMFY YGSVLDSMEA  240
MSVSRGGAIG NGAGADAYVQ REIFNIVCYE GSARTERHEP LADCAMPADG ADTAKEHDDN  300
HKLKMSIGES SDSHLPDIGA Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-381427742307GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171000.10.0DELLA protein SLR1-like
TrEMBLM8BX720.0M8BX72_AEGTA; Uncharacterized protein
STRINGEMT075430.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-70GRAS family protein