PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07248
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 243aa    MW: 25810 Da    PI: 8.4893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07248genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.8e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT  Ed+ l+ +vk +G g+Wk ++ + g+ R++k+c++ w++yl
         EMT07248 14 RGAWTSKEDDTLASYVKAHGEGRWKEVPLKAGLQRCGKSCRLLWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding51.13e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
         EMT07248  67 RGNISDDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.832961IPR017930Myb domain
SuperFamilySSF466892.19E-2611108IPR009057Homeodomain-like
SMARTSM007171.7E-81363IPR001005SANT/Myb domain
PfamPF002492.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-211568IPR009057Homeodomain-like
CDDcd001672.05E-71661No hitNo description
PROSITE profilePS5129425.25662116IPR017930Myb domain
SMARTSM007173.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.6E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2369115IPR009057Homeodomain-like
CDDcd001675.03E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRRACSANE GVKRGAWTSK EDDTLASYVK AHGEGRWKEV PLKAGLQRCG KSCRLLWLNY  60
LRPSIKRGNI SDDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS TLGRKVLPAR  120
LDTTRMVASP GASAGSCSST GAATSALSSN CGAGTSAKAA APPLSIAVWA PKPVRCTGGL  180
FFGRDAPPPP VTETRAVGGD GDECSGSSLG ASSGGGDWMD DVRALSSFLE SDEDWVNSLQ  240
MAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-26911622128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2521460.0AB252146.1 Triticum aestivum Tamyb3 mRNA for myb-related protein, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156277.11e-176anthocyanin regulatory C1 protein-like
SwissprotP102902e-80MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLM8BWF81e-174M8BWF8_AEGTA; Anthocyanin regulatory C1 protein
STRINGEMT072481e-175(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-46myb domain protein 7
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]