PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06644
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 399aa    MW: 43404 Da    PI: 6.0572
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06644genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-172976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+llv+ v+++G g+W+++ r+ g+ R++k+c++rw ++l
         EMT06644 29 KGPWTPDEDQLLVEHVRRHGEGSWNAVRRETGLLRCGKSCRLRWANHL 76
                     79******************************99**********9986 PP
2Myb_DNA-binding51.62.2e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE+ l+++++++ G++ W++I+++++ gRt++++k++w++
         EMT06644  82 RGPFSPEEERLILRLHALIGNK-WARISAHLP-GRTDNEIKNYWNT 125
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9512476IPR017930Myb domain
SuperFamilySSF466899.36E-3126123IPR009057Homeodomain-like
SMARTSM007171.6E-142878IPR001005SANT/Myb domain
PfamPF002494.6E-162976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-223083IPR009057Homeodomain-like
CDDcd001674.49E-123176No hitNo description
PROSITE patternPS0017504453IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129426.72477131IPR017930Myb domain
SMARTSM007176.8E-1781129IPR001005SANT/Myb domain
PfamPF002491.0E-1582125IPR001005SANT/Myb domain
CDDcd001672.51E-1284127No hitNo description
Gene3DG3DSA:1.10.10.608.4E-2684130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAVEAPQPEQ AAGESLEQGA AAGGGRLKKG PWTPDEDQLL VEHVRRHGEG SWNAVRRETG  60
LLRCGKSCRL RWANHLRPNL KRGPFSPEEE RLILRLHALI GNKWARISAH LPGRTDNEIK  120
NYWNTRLKRR KRAGMALYPP DVEREVALVR AGKLRPIVDA DGNASSLQAP LLLDAAADQF  180
AWPAAPPFHP AYNNVAPPQP FQFTGNISHN PQALLAAQVP YLHHDEVSAG LGHANKLYAD  240
APGMPPLVPP AVQELPSNQS PADAGGPLEM LVLEQDQRLP GAALLRVTSM PELVYNENDY  300
SAWPSGLSGG SGSRSEGDVT SHYGGKCDCF DGVKPAKRMA ASLVVAEEEV SGLFGGEDLV  360
EVWPDKPPES ITKDDFNLQM EMQHLMPPVP LSADEHGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29271305107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731080.0AK373108.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3021G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171960.10.0transcription factor MYB104-like
TrEMBLM8AZ440.0M8AZ44_AEGTA; Transcription factor GAMYB
STRINGEMT066440.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-60myb domain protein 101