PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 429aa MW: 48518.1 Da PI: 5.1892 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.5 | 1.1e-11 | 249 | 295 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WT+eE++ ++ + + +G g+Wk I++++ ++ t+ ++ s+ qk+ EMT05659 249 RKFWTKEEHKSFLYGLEVYGRGDWKNISKHFVTTQTPVHVSSHAQKF 295 678******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.27 | 244 | 300 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.94E-15 | 246 | 301 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-8 | 247 | 300 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.1E-13 | 248 | 298 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.4E-7 | 248 | 298 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.01E-6 | 252 | 281 | No hit | No description |
Pfam | PF00249 | 2.3E-7 | 252 | 294 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MDPIVNQGWT SSEVEEAYSL IASLNTNKIM YDDNDDKNKK QHYIVNSLHA LFHSKTMKQQ 60 REGTNVTGGS PQNIFTFCDP VNGNYELPKE ENGASSTHSV YTMGDHANEN FGVREKETTI 120 MDNNGLSFGC AVEDMRITVT GEALLMADNN KMKVLENNIS IDQPIVAPHQ WGFWTDEEHS 180 MGGLVNEDIE VQEGEEMTMD DSGFSFHCTL EDTRIRKMEE APVMVDKNKM VVLENNSSND 240 RPVVAQHQRK FWTKEEHKSF LYGLEVYGRG DWKNISKHFV TTQTPVHVSS HAQKFFKRIE 300 KKASSGIKRY SINDVRLHDN ELLAANNSSA PRQTLSFTSL NNDPSFRLQA PTSSFAVMNN 360 LAQCSPSIYN QQVGQQPMWR EQQMMGSTAA VMGRVGNYVP DGQQGSAYFY LAMYEQDVVD 420 RRLGPCLEC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169890.1 | 0.0 | uncharacterized protein LOC109755392 | ||||
TrEMBL | M8AW58 | 0.0 | M8AW58_AEGTA; Myb-like protein J | ||||
STRING | EMT05659 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 7e-19 | MYB_related family protein |