PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT04645

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

G2-like

Protein Properties

Length: 329aa MW: 35670.5 Da PI: 8.0997

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT04645	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	19	73	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYR+ EMT04645 19 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRM 73 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-32	16	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.716	16	76	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	19	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	19	74	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	21	72	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-24	118	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MERAGYGVGA GVVLSRDPKP RLRWTPDLHE RFVEAVTKLG GPDKATPKSV LRLMGMKGLT 60 LYHLKSHLQK YRMGKQSKKD TGFETNRGAF AAQGISFSSA VPPNVPSAGN SNMGETPLAD 120 ALRYQIEVQR KLHEQLEVQK KLQMRIEAQG KYLQTILEKA QKNLSYEAGG DATLETTRSQ 180 LTDFNLALSG FMDDATQACQ QNGGELAKAL SDDGLRAGNL GFQLYHGGDD VKCATDEDLL 240 LLDLNIKGGY DHRLSAHGMP RGAVDLTVGQ HRSRWHITPN SSNAGVSLPL LITDAIVANI 300 NDAAPKMALL YAIVTITGRV EATDNEGCA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-21	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356926	0.0	AK356926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042E14.
GenBank	AK366041	0.0	AK366041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039P18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020170372.1	0.0	myb family transcription factor PHL11-like
Swissprot	C0SVS4	2e-64	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	M8ASG0	0.0	M8ASG0_AEGTA; Myb family transcription factor APL
STRING	EMT04645	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-65	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]