PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04641
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 432aa    MW: 46082.6 Da    PI: 8.5387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04641genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-05189212123
               EEETTTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
               y+C+ Cg++ s + +L+ H+ + H
  EMT04641 189 YPCKVCGEVLSKPQQLELHQAMkH 212
               99******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.224189217IPR007087Zinc finger, C2H2
PROSITE patternPS000280191212IPR007087Zinc finger, C2H2
SuperFamilySSF563996.81E-11214431No hitNo description
Gene3DG3DSA:3.90.228.106.8E-8245430IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016132Biological Processbrassinosteroid biosynthetic process
GO:0031225Cellular Componentanchored component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAGGARCSSL LRGFLSLFFV MFLHIGHAGC CFSPGSASQQ HEEDDAGAAS SSSSKRRKIS  60
PLAFSPAVSS STGVEERAGA RRRARHVSSL ATSLRCYIHR IFSSAGHKNS VPGGEEQEEA  120
VTTTLSSPLA QSVTQRQASV VLSTPSSPCA SPFLSPMSPQ SLSVTPLVPC SPLATRQLSR  180
SFAARGDLYP CKVCGEVLSK PQQLELHQAM KHSLSELTHL DSSMNIIRMI FLAGWGLSPP  240
GAGYPPAVRR ILRIHHNPRA LSRFEEYRDL VRSRAARRCA GASGAVVEER CIADGNERLR  300
FHCATMLCSL GAGVCGSPYC CTCTILRHGF AGKQADVDGI ATYSSGWAAH ASLPDEVERE  360
FAFLQVRRAM LVCRVVAGRV VRGVDGDGDK VGYDSMVPVP PGGGGRGGED DGELLVFNPR  420
AVLPCFVIMY GS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2318150.0AC231815.1 Oryza minuta clone OM__Ba0073C01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153470.10.0uncharacterized protein LOC109738783
TrEMBLA0A3B6JLU90.0A0A3B6JLU9_WHEAT; Uncharacterized protein
TrEMBLA0A453IFT90.0A0A453IFT9_AEGTS; Uncharacterized protein
TrEMBLM8AJI00.0M8AJI0_AEGTA; Uncharacterized protein
STRINGEMT046410.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.13e-52C2H2 family protein