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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
EMT03273 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family |
BBR-BPC |
Protein Properties |
Length: 350aa MW: 38998.3 Da PI: 10.2524 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
EMT03273 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 349.1 | 1e-106 | 1 | 346 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki.......rernlalsekkaavaerd..................maflqrdkalae.rn 71
mdddgs + rn+g+ye k nlglqlm s+a rd+k+ +++ a +++ +++++rd m+f++++++++ ++
EMT03273 1 MDDDGSLSiRNWGFYETM---KGNLGLQLMPSVAggHRDTKPllpngtfLQHHNAPHHPPHSHHPRDygngepsggmpteppaihMDFVRNEAWMHPsQH 97
9**************965...*************999*****999999955555699999************************************9533 PP
GAGA_bind 72 kalverdnkllalllvensla..........................salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeak 145
++ ++++++ + ++++++ + +++p+ +++++++ +++lq+ ++++ +++eeek+ p++e+++++
EMT03273 98 QHQHQHHHQNQHQQQHQHQHQhsreqkvlhavplgppghighpghavHHHPTDFGMMPDARGAHTLQM-----MQPQEPPVPEEEKIAP-PLVEEHSVVG 191
33333333333333333333344779999999999999999999999999999999999999999999.....6666666778776665.5566678888 PP
GAGA_bind 146 ekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLP 245
k+ +kkrq++++pk +k kk+kk +++ ++ +++ +rs+ + k +++v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP
EMT03273 192 SKPLVKKRQQGRQPKLPKPKKPKK-VATPGEDGAPKARAPRSRGPLKPVEMVINGIDFDISRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLP 290
8889999*****************.556667777777779************************************************************ PP
GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++tkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
EMT03273 291 MNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 346
*******************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0050793 | Biological Process | regulation of developmental process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MDDDGSLSIR NWGFYETMKG NLGLQLMPSV AGGHRDTKPL LPNGTFLQHH NAPHHPPHSH 60 HPRDYGNGEP SGGMPTEPPA IHMDFVRNEA WMHPSQHQHQ HQHHHQNQHQ QQHQHQHQHS 120 REQKVLHAVP LGPPGHIGHP GHAVHHHPTD FGMMPDARGA HTLQMMQPQE PPVPEEEKIA 180 PPLVEEHSVV GSKPLVKKRQ QGRQPKLPKP KKPKKVATPG EDGAPKARAP RSRGPLKPVE 240 MVINGIDFDI SRIPTPVCSC TGAPQQCYRW GAGGWQSACC TTSISTYPLP MNTKRRGARI 300 AGRKMSQGAF KKVLEKLAGE GYNLNNPIDL KTFWAKHGTN KFVTIRGFLH
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ507214 | 0.0 | AJ507214.1 Hordeum vulgare bbr gene for barley B recombinant. |
GenBank | AK372672 | 0.0 | AK372672.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3008N24. |
GenBank | AK376389 | 0.0 | AK376389.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H22. |