PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03129
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 1967aa    MW: 217921 Da    PI: 7.0702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03129genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.8e-10828875355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               + h ++Er+RR+++ + f  L +++P +     kK +K + L  +++Y+k+L+
  EMT03129 828 QEHVIAERKRREKLQQQFVSLATIVPGL-----KKTDKLSLLGSTIDYVKQLE 875
               5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF562199.68E-17133269IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.102.4E-8134269IPR005135Endonuclease/exonuclease/phosphatase
PfamPF000785.2E-8498585IPR000477Reverse transcriptase domain
PROSITE profilePS5088814.716825874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13828891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7829875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14829885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-8830879No hitNo description
SMARTSM003531.0E-10831880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF537325.1E-23010891700IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
TIGRFAMsTIGR01341010911963IPR006249Aconitase/Iron-responsive element-binding protein 2
Gene3DG3DSA:3.30.499.101.3E-8110921314IPR015931Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
PfamPF003303.1E-18111331636IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
CDDcd01586011541638No hitNo description
PRINTSPR004155.1E-4212151228IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
PRINTSPR004155.1E-4212391247IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
PRINTSPR004155.1E-4212681281IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
PRINTSPR004155.1E-4212821297IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
Gene3DG3DSA:3.40.1060.104.1E-3613151435IPR015932Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2
PRINTSPR004155.1E-4213441357IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
PRINTSPR004155.1E-4213581371IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
Gene3DG3DSA:3.30.499.101.3E-6614361461IPR015931Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
PRINTSPR004155.1E-4214401454IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
Gene3DG3DSA:3.30.499.101.3E-6614931648IPR015931Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
PROSITE patternPS00450015011517IPR018136Aconitase family, 4Fe-4S cluster binding site
PRINTSPR004155.1E-4215051516IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
PRINTSPR004155.1E-4215671580IPR001030Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
PROSITE patternPS01244015671580IPR018136Aconitase family, 4Fe-4S cluster binding site
SuperFamilySSF520166.08E-8517051962IPR015928Aconitase/3-isopropylmalate dehydratase, swivel
Gene3DG3DSA:3.20.19.102.6E-7717111963IPR015928Aconitase/3-isopropylmalate dehydratase, swivel
CDDcd015802.50E-10617421910No hitNo description
PfamPF006943.6E-4717651893IPR000573Aconitase A/isopropylmalate dehydratase small subunit, swivel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006007Biological Processglucose catabolic process
GO:0006096Biological Processglycolytic process
GO:0006101Biological Processcitrate metabolic process
GO:0006102Biological Processisocitrate metabolic process
GO:0006833Biological Processwater transport
GO:0006972Biological Processhyperosmotic response
GO:0007030Biological ProcessGolgi organization
GO:0007033Biological Processvacuole organization
GO:0009266Biological Processresponse to temperature stimulus
GO:0010039Biological Processresponse to iron ion
GO:0015979Biological Processphotosynthesis
GO:0046686Biological Processresponse to cadmium ion
GO:0055072Biological Processiron ion homeostasis
GO:0005739Cellular Componentmitochondrion
GO:0005773Cellular Componentvacuole
GO:0005829Cellular Componentcytosol
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0048046Cellular Componentapoplast
GO:0003994Molecular Functionaconitate hydratase activity
GO:0005507Molecular Functioncopper ion binding
GO:0046983Molecular Functionprotein dimerization activity
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 1967 aa     Download sequence    Send to blast
MQGCAPAASA QFSPVGGWAG GLTPNGVSWD DIITFGGIPD PLSEGRRMSW RLQDQPDVDD  60
MQLRCAMRAA KLRDIEVTTD ALGVSVLDSF CADLAPSLPE NEEDEYSISP WDSIPADSVR  120
NVVMGDFAVK FRVRSKADGF NWALVAVYVA AQPELKPDFL SDLVRICGSE QLPILVGGDF  180
NIIRRQVEKN NDNFDGRWSF MFNTIIEILD LREIELSGRK FTWANTLPIP TFEKLDRVLA  240
SVEWEQKFPL VKVQALSHAI SDHTPLLVDS GEATHVGNKN TFSFELAWFE REGFLDLIAR  300
EWAKDSGGRS NVERWQNKIR HLRQFPRGWA KHLSGIYKVE KERLLLLIQS LDLKAESSIV  360
DTRELETKVE AEMRLKELLR EKKLKWALRA KVRKIVQGDD NTQFFHMIAN GKHRKKRIFQ  420
LEQDEGTILG QENLKLYITN YYKQLFGPPE DNFVSLDESR VEDVPQLAAD ENDILTAPFS  480
EKELQLFHLN FGTITLLPKK TKAVRIEQFM PICLLNVSFK IFTKVGTNRL TQIAHSVVQP  540
SQSAFMPDRN ILEGVVVLHE TLHEIHTKKL DGVVFKVDFE KAYDKEGLRR MARPKDQGGL  600
GIENLEVKNR CLLSKWLYKL SVETDATWAQ ILRNKYLQSK TLSQVTVIFR ATTLICMWSL  660
LTPTEARERL VTGSIRWETV ARAIFNRDIM EQPKQWLTQT EQEELAYMYQ QEGGPVPVPG  720
REQQFAEPPL PGREAQCYTP PMAIPMFSPS RSSNFPSFGG SSSLPNLPFG SATVKNELGQ  780
PSPPPSSNFL SFGPGQASTL NFSGWQRDGV QGTMQQLQAP ERRGRAPQEH VIAERKRREK  840
LQQQFVSLAT IVPGLKKTDK LSLLGSTIDY VKQLEEKVKA LEQGSRRPSE SMVFDSKCCI  900
SAPNNDAAGP SGSGSGSGYS SPDIEASIKG NTALLNICCN ERRGVLVMIM SELENQGLSI  960
INTNVIPFTD SCLNITTTAK ARPLCPGHED HAEPKLQTKY KALRKFRHQR QELFSIKKQT  1020
RLQGGLGDLQ RLASSKAKRK GGVYILKKSN HSLFLLKIEP SAPEDDIPAT KNSYDEILTS  1080
LAKPGGGADF GKYYSLPALA DPRIDRLPYS IRILLESAIR NCDEFQVTGK DVEKILDWEN  1140
SATKQVEIPF KPARVLLQDF TGVPAVVDLA CMRDAMSKLG SDPNKINPLV PVDLVVDHSV  1200
QVDVARSENA VQANMELEFS RNKERFGFLK WGSTAFNNML VVPPGSGIVH QVNLEYLARV  1260
VFNNGGILYP DSVVGTDSHT TMIDGLGVAG WGVGGIEAEA TMLGQPMSMV LPAVVGFKLS  1320
GKLRNGVTAT DLVLTVTQML RKHGVVGKFV EFYGGGMGEL SLADRATIAN MAPEYGATMG  1380
FFPVDAKTLD YLKLTGRSDE TVAMIETYLR ANNMFVDYKQ VQAERVYSSY LELDLDEVEP  1440
CLSGPKRPHD RVTLKNMKSD WLSCLDNKVG FKGFAVPKES QGKVAEFSFR GTPAKIKHGD  1500
VVIAAITSCT NTSNPNVMLG AALVAKKACD LGLEVKPWIK TSLAPGSGVV KKYLDKSGLQ  1560
KYLNQLGFNI VGYGCTTCIG NSGDLDESVA AAITDNDVVA AAVLSGNRNF EGRVHALTRA  1620
NYLASPPLVV AYALAGTVNI DFEKEPVGIS KDGKEVYFRD IWPTTDEIAE VVKASVLPDM  1680
FKGTYEAITK GNPMWNELPV SASTLYPWDP KSTYIHEPPY FKDMTMTPPG ARPVKDAYCL  1740
LNFGDSITTD HISPAGSIHP DSPAAKYLKE RNVERKDFNS YGSRRGNDEI MARGTFANIR  1800
IVNKFLKGEV GPQTIHVPSG EKLAVFDAAM KYKNEGHDTI ILAGAEYGSG SSRDWAAKGP  1860
MLQGVKAVIA KSFERIHRSN LAGMGIVPLC FKAGEDADTL GLTGHERYTI QLPTDVNEIK  1920
PGQDVTVTTD NGKSFTCTLR FDTEVELAYY THGGILPYVI RKIAAEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2b3x_A0.01092196419887Iron-responsive element binding protein 1
2b3y_A0.01092196419887Iron-responsive element binding protein 1
2b3y_B0.01092196419887Iron-responsive element binding protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1833838ERKRRE
2834839RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2482570.0AK248257.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf12g06, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLN1QRT20.0N1QRT2_AEGTA; Putative aconitate hydratase, cytoplasmic
STRINGEMT031290.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.19e-26bHLH family protein