PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT03062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | G2-like | ||||||||
Protein Properties | Length: 214aa MW: 23289.9 Da PI: 10.3722 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.8 | 1.4e-29 | 20 | 72 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 pr++Wt eLH++F++a+e LGG+++AtPk +l++m+vk Lt++hvkSHLQ+YR EMT03062 20 PRMQWTAELHRSFLQAIECLGGEHNATPKLVLKVMGVKELTISHVKSHLQMYR 72 9**************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 16 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-15 | 17 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.9E-23 | 20 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-7 | 21 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGSSAKKQEA VRRYVRSRAP RMQWTAELHR SFLQAIECLG GEHNATPKLV LKVMGVKELT 60 ISHVKSHLQM YRGPSTRKAK REAQPGLQRR HSCAADEQGG APFMCPPLKR ARTGAGTEAA 120 GEGMQGGQSQ GISGMKTSGA VNRYCIDDYY MQAMAMERRI MEGLSGWQRE GGAAGGGCRA 180 RNGGPQRLAE GCCCCGCCFR PPDRGMLGAR IRRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-16 | 21 | 77 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-16 | 21 | 77 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-16 | 21 | 77 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-16 | 21 | 77 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-16 | 21 | 77 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-16 | 21 | 77 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-16 | 21 | 77 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-16 | 21 | 77 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185290.1 | 1e-119 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R7W4M6 | 1e-154 | R7W4M6_AEGTA; Putative Myb family transcription factor | ||||
STRING | EMT03062 | 1e-155 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2966 | 35 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 9e-28 | G2-like family protein |