PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03010
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 335aa    MW: 35970.7 Da    PI: 7.1486
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.92.3e-172370249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              rie k  rqv f+kRr+g++ KA+EL vLC+a+va + fs  gk + +
  EMT03010 23 RIEKKDARQVCFAKRRQGLFNKANELAVLCGAQVAAVTFSDGGKAFSF 70
              8****************************************9997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-261473IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.8431474IPR002100Transcription factor, MADS-box
CDDcd002653.81E-311583No hitNo description
SuperFamilySSF554556.67E-241584IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-171636IPR002100Transcription factor, MADS-box
PfamPF003191.6E-212370IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-173651IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-175172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVGRAAAPKR RAGKGRQKIA IRRIEKKDAR QVCFAKRRQG LFNKANELAV LCGAQVAAVT  60
FSDGGKAFSF GHPSAEAVVD RFLAGGGALV QGADDDNELK ELHLLHGELR TRLKEVKAQK  120
GRVVEAMAKE RASGDQIAAW LDPELGDMGE EEMMAFAVKL MVARAAVSER AYQVLLEAQN  180
VSRMLQAPPP PQQQLFGGST FEFGGSSSGN AGMEMQQMQM VMPSTQGFAV GTHMHQMLMA  240
MPPPPGLAYG VDMQQMHMSI PPSPGFGAGM EMQQMLMAIQ PQPEFAAETE MQQAAMAMPP  300
PQEFPVGMAM PPPPGVAAGM NMVQQGPGPN MGFPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192347.10.0MADS-box transcription factor 27-like
TrEMBLN1QRQ70.0N1QRQ7_AEGTA; Agamous-like MADS-box protein AGL62
STRINGEMT030100.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-22AGAMOUS-like 61