PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02831
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 576aa    MW: 62808.1 Da    PI: 7.6112
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02831genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-151292051799
               E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +p +fa+++ +     ++ + led  g +W+v+l  + ++gr  ++ GW++Fv ++ + +g+f+vF++++rs f   v++f k
  EMT02831 129 DVPPRFAKNIpE---LADTNVYLEDAFGLRWRVYL--CARDGRLSFGHGWRNFVLDHTVAVGEFLVFRHISRSVF--AVQIFAK 205
               5899***87743...35668***************..*********************************99999..9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-2095208IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-1696203No hitNo description
SMARTSM010199.7E-1197206IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-19123208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111130206IPR003340B3 DNA binding domain
PfamPF023622.0E-12130205IPR003340B3 DNA binding domain
CDDcd100176.82E-9493568No hitNo description
SMARTSM010190.87493571IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-10498560IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-8505559IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.559509571IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MVEMMEVIKK EQEEDGTAQR QGLEEGGAKK IGGGGHEEEP SPSGKVKKKA RKQGVSDPQR  60
KRACVDCTRR CSRVHGRAAA SSSCKAPPAP AAALTSFFKV MTGSFSEKLI CTLQWCRDSS  120
PGIYWCMQDV PPRFAKNIPE LADTNVYLED AFGLRWRVYL CARDGRLSFG HGWRNFVLDH  180
TVAVGEFLVF RHISRSVFAV QIFAKSACER LHLCEKNKRQ SKKRKKPGEK ASSDGDRTAK  240
ASKKSSEDKD KKSSKKKQRA CDLLDGDQDR ARGDQDHMVL ISTANTQAAN CGGSDFGTYA  300
EPTTPLAMMD LDDEITDDIF LTADAYEFET DLCIPEEPGA FPVDNGIGME APVTHGETSG  360
FSCAEMIGSR NCDSSVGVGL CHGEKSAGLK NKQMADARVI TSTYTNAPVL DMDMTALPSN  420
ALSEIREEKP SPRIDAAAPS SECATGNCKK DTDYKLMEFP SEGNQRLFLV AQSLVNVASA  480
GKNAVCNLQE LPCRMPVLPG RKKQGRKVVV LEDPGGRRWP VLYLCTPTFS GFVAGWADVR  540
AENGLREGDA CELELRRGSY SELALRVLGA PGSTSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221225KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147291.10.0B3 domain-containing protein Os01g0905400-like
TrEMBLN1QSF60.0N1QSF6_AEGTA; B3 domain-containing protein
STRINGEMT028310.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-08B3 family protein