PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02802
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 204aa    MW: 22608.5 Da    PI: 9.7581
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02802genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565e-181154346
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
              i n+s r  tf kRr g++KKA+EL +LCd++++++++++  ++
  EMT02802 11 IPNDSTRRGTFKKRRRGLMKKASELAILCDVRACMLVYGEGETV 54
              889************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.684161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-21160IPR002100Transcription factor, MADS-box
CDDcd002661.52E-29285No hitNo description
SuperFamilySSF554551.23E-23395IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-11323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MARKKVTLQY IPNDSTRRGT FKKRRRGLMK KASELAILCD VRACMLVYGE GETVPEVFPS  60
HDGAVKILNI FKKMPELEQC KKMMNQEGFL RQRIDKLRDQ VHKFGRECRE QEIRTLLLKA  120
MCGNLPGLVS LNIEELTSVG WKVEMLLKGI GDRIAKLHGQ PSAPYMTDGM GMGSPAINQA  180
PSAQEGGLDM VRSGGDLGAL VCSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLQYIPNDSTRRGTFKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199163.11e-149agamous-like MADS-box protein AGL80
TrEMBLR7W4A71e-148R7W4A7_AEGTA; Agamous-like MADS-box protein AGL80
STRINGEMT028021e-149(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-33AGAMOUS-like 80