PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 124aa MW: 14399.8 Da PI: 10.4695 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.2 | 1.7e-16 | 13 | 50 | 5 | 42 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 n+s r tf kR g++KKA+EL +LCd++++v+++ + EMT02801 13 NDSTRRGTFKKRHRGLMKKASELAILCDVRACVLVYDE 50 899999*****************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.6E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.072 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.81E-24 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 8.89E-22 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-15 | 13 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MARKKVTLQY TPNDSTRRGT FKKRHRGLMK KASELAILCD VRACVLVYDE GEMVPEVFPS 60 HVGAVKILNI FKNMPELEQY KKMMNQEGFL RERIDKLRDQ LRKFGREAGT TRDPPAQGHV 120 WQPP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-145 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199157.1 | 1e-89 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | R7W5Q2 | 3e-88 | R7W5Q2_AEGTA; Agamous-like MADS-box protein AGL80 | ||||
STRING | EMT02801 | 5e-89 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-27 | AGAMOUS-like 80 |