PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02398
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family CPP
Protein Properties Length: 262aa    MW: 28226.2 Da    PI: 4.5626
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02398genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.12e-14643542
       TCR  5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
              +C+C+k++Cl++YC Cf+a ++C+e C+C++C+N+e++
  EMT02398  6 HCTCEKTQCLQRYCHCFEAWVFCDEGCSCQGCRNTEDN 43
              8*********************************9975 PP
2TCR48.12.4e-1585122239
       TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
               + kgCnC++s+C+k+YCeCf++g+ Cs++C+C++C N+
  EMT02398  85 HVKGCNCHNSECKKLYCECFKHGVGCSDKCQCTGCGNT 122
               689**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-9243IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163426.7013124IPR005172CRC domain
PfamPF036384.6E-11641IPR005172CRC domain
SMARTSM011146.6E-1184125IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-1187122IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDDLPHCTCE KTQCLQRYCH CFEAWVFCDE GCSCQGCRNT EDNSDEVDER AECIMKKKPD  60
AFKPKIIAGD GPGLQQQQQQ AAGVHVKGCN CHNSECKKLY CECFKHGVGC SDKCQCTGCG  120
NTFGVKGAAQ QAHSDSPEGT SGGSGETLAR SNGSSAIIND DMASQLTETS IMDDIHIPSE  180
LSHMDVDLGP PTQALGDGGL EDIIFYSDFQ HNIDPQAHHW LVQQADASLS NDANSLLDQG  240
PSKTDTCDLL HHGSQINKLG GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-11712114120Protein lin-54 homolog
5fd3_B4e-11712114120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-131HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148968.10.0protein tesmin/TSO1-like CXC 2
TrEMBLR7W0E80.0R7W0E8_AEGTA; Uncharacterized protein
STRINGEMT023980.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.18e-31Tesmin/TSO1-like CXC domain-containing protein