PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02269
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family AP2
Protein Properties Length: 466aa    MW: 50254.1 Da    PI: 6.4629
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02269genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11129185155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  EMT02269 129 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDMAALKYWG 185
               57*******************5444.2455536655.779999**************98 PP
2AP247.44.7e-15228279155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  EMT02269 228 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 279
               57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-15129195IPR016177DNA-binding domain
CDDcd000181.84E-17129195No hitNo description
PfamPF008479.0E-9129185IPR001471AP2/ERF domain
SMARTSM003804.9E-23130199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12130194IPR001471AP2/ERF domain
PROSITE profilePS5103217.425130193IPR001471AP2/ERF domain
PRINTSPR003671.8E-6131142IPR001471AP2/ERF domain
CDDcd000186.46E-23228289No hitNo description
SuperFamilySSF541716.15E-18228289IPR016177DNA-binding domain
PfamPF008475.8E-10228279IPR001471AP2/ERF domain
SMARTSM003801.5E-33229293IPR001471AP2/ERF domain
PROSITE profilePS5103219.045229287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18229288IPR001471AP2/ERF domain
PRINTSPR003671.8E-6269289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDMDMSSATH PAHHWLSFSL SNNYHHGLLE ALSSSSSAHQ IAGDEAPVDE APKMEDFLGC  60
VGSAGTGSTA VVDHGELGSI AAGFLHRYPA HDGMTDQNSG AVTVAAATME VAESDQARRP  120
AETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDMAA  180
LKYWGPTTTT NFPVSNYEKE LEEMKSMTRQ EFIASLRRKS SGFSRGASIY RGVTRHHQHG  240
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVESILNSD  300
LPIGAGAAAR ASKFQPDVLS LPAPNVASPD MLPPAEKDYW SLLALHYQQQ QQQHLQQQQF  360
PASAFDTYGS GVNVDFTMGM SGTNNPSGGG ATVWGATGAT GHGDGSRQSN SYASNIPYAS  420
MVSGSAASAG GGYEGSTGNN GTWVTTSNPA ASATAPQYYN YLFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400030.0BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183528.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-124AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLR7VZY70.0R7VZY7_AEGTA; AP2-like ethylene-responsive transcription factor AIL5
STRINGEMT022690.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-119AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]