PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 25073.2 Da PI: 10.286 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.2 | 1.6e-53 | 2 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 lppGfrFhPtdeel+ +yL+++++++++++ ++i++vdiyk++Pw Lp+k++ +++ewyfF++rd+ky++g r+nra+ sgyWkatg+dk++ ++ +ge v EMT02241 2 LPPGFRFHPTDEELILHYLRNRAAESPCPV-SIIADVDIYKFDPWALPSKASYGDREWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPIRCSaTGESV 101 79****************************.89***************988899**************************************99878999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfykgr pkg kt+W+mheyrl EMT02241 102 GVKKALVFYKGRPPKGIKTNWIMHEYRL 129 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-59 | 2 | 135 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.714 | 2 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-28 | 3 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLPPGFRFHP TDEELILHYL RNRAAESPCP VSIIADVDIY KFDPWALPSK ASYGDREWYF 60 FTPRDRKYPN GVRPNRAAGS GYWKATGTDK PIRCSATGES VGVKKALVFY KGRPPKGIKT 120 NWIMHEYRLA AADGHAGNTY RPMKFRNASM RLGQMDSSAS TSVAGEGAAG KRKRPSEDGD 180 HNRPTNQPAT AVTGKKPNSS CLGATTFQTG NNTLQGSLGQ GHQTLLHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-64 | 2 | 139 | 20 | 155 | NAC domain-containing protein 19 |
3swm_B | 7e-64 | 2 | 139 | 20 | 155 | NAC domain-containing protein 19 |
3swm_C | 7e-64 | 2 | 139 | 20 | 155 | NAC domain-containing protein 19 |
3swm_D | 7e-64 | 2 | 139 | 20 | 155 | NAC domain-containing protein 19 |
3swp_A | 7e-64 | 2 | 139 | 20 | 155 | NAC domain-containing protein 19 |
3swp_B | 7e-64 | 2 | 139 | 20 | 155 | NAC domain-containing protein 19 |
3swp_C | 7e-64 | 2 | 139 | 20 | 155 | NAC domain-containing protein 19 |
3swp_D | 7e-64 | 2 | 139 | 20 | 155 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251058 | 0.0 | AK251058.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97a05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162550.1 | 1e-111 | NAC transcription factor NAM-B1-like | ||||
Swissprot | D2SMN4 | 3e-75 | NAMB1_HORVS; NAC transcription factor NAM-B1 | ||||
TrEMBL | N1QU79 | 1e-170 | N1QU79_AEGTA; NAC domain-containing protein 29 | ||||
STRING | EMT02241 | 1e-171 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-75 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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