PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02000
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 620aa    MW: 70302.2 Da    PI: 8.604
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02000genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21.1e-111212011399
               TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + +v+p  f+++ ggk    +t++l+ ++g  ++v +  + + +r++l+ GW  F +an+++e+ +++F++ g+s f   v++f++
  EMT02000 121 MHSMVIPEWFVSQLGGKI--WRTIRLQAPDGIIYDVGV--SENMNRIILKFGWAAFLDANEIEENYSLMFRYLGNSLF--EVTIFDS 201
               4669*******9999995..559***************..**********************************9999..8999886 PP
2B331.23.8e-10313408495
               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS...SEE..EEE CS
        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr...sefelvvk 95 
               ++++s+v +sg lv+ k++ ++h  +  e++ ++l+  ++++ W+ ++ +  +  + +          +Fv++n+++egD+++F+ + +   ++f+++v+
  EMT02000 313 EMKKSNVKQSGTLVICKDYGRKHL-PC-EETNIILQLpRKNKGWKCRFHIrpS--GTSdaGRRNLSLGNFVRDNHVREGDICLFEPMTNakeKRFTMTVH 408
               6889*******************4.33.3346777774667999999977453..4332233334467*****************553331355666665 PP
3B337.44.6e-125486173499
               SEEEEEE.TTS-EEEEEE..EEETTEEEE-..TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  34 ktltled.esgrsWevkliyrkksgryvlt..kGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
               + l+l    ++ sW  k++++ +  ++ ++  kGW  F+++n+L+egD ++Fkl+++ +  ++v++++r+
  EMT02000 548 VGLVLHReGRSGSWHTKMQHSMQHTTHAMRvlKGWTFFARDNRLREGDLCLFKLIKNkEPLTMVIHIIRR 617
               4445544245599*****775555555555669**********************999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.771109202IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-15111202IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-5112202IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-14115203IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-11117200No hitNo description
PfamPF023621.1E-9121201IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-12302408IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-12305410IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-11308409No hitNo description
SMARTSM010190.012310413IPR003340B3 DNA binding domain
PROSITE profilePS508637.627310413IPR003340B3 DNA binding domain
PfamPF023629.7E-9312409IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-11493617IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-10494617IPR015300DNA-binding pseudobarrel domain
CDDcd100178.78E-9499616No hitNo description
SMARTSM010190.049501618IPR003340B3 DNA binding domain
PROSITE profilePS5086310.687550618IPR003340B3 DNA binding domain
PfamPF023621.1E-9550617IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MGKEGVVVVH GSRLYGGGSF EVAMDGDGAW YKTLMPLWMW GRSFVRFLKI ILLYISLFHT  60
PISCIEIGIR KEKLGLLFVT QQQNLEISNF LAIQDVSKMS NPCECCERKI RFIRKINGNF  120
MHSMVIPEWF VSQLGGKIWR TIRLQAPDGI IYDVGVSENM NRIILKFGWA AFLDANEIEE  180
NYSLMFRYLG NSLFEVTIFD SNGKEKVSHS HYTDNSSSSH PGATQSSAGE GSDSDGSQKE  240
SSYRYKKSGK MPAIAYSSEE FSAEDNSVES DDQQMLSEYC VFSGRCYLTE AQKAKILALV  300
KKIRPEIPVL VVEMKKSNVK QSGTLVICKD YGRKHLPCEE TNIILQLPRK NKGWKCRFHI  360
RPSGTSDAGR RNLSLGNFVR DNHVREGDIC LFEPMTNAKE KRFTMTVHLV HKAGIYHSPG  420
ERTDIGSNHG RTSTKMASAM EEPPTDGEEY SSEHEDHEIS DDSKGGSEPP FMLADRASLT  480
RAQEKKVLEK VEEIESDVPL YVAIMSKSNV YRGSGCNTPT LHFGYQYTGR YLVQKSAAGY  540
HRGKSSLVGL VLHREGRSGS WHTKMQHSMQ HTTHAMRVLK GWTFFARDNR LREGDLCLFK  600
LIKNKEPLTM VIHIIRREEY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9965231e-162HE996523.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_58237.
GenBankHG6703061e-162HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198703.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLN1QRV90.0N1QRV9_AEGTA; B3 domain-containing protein
STRINGEMT020000.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-20B3 family protein