PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT01567

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

ARF

Protein Properties

Length: 1052aa MW: 117874 Da PI: 6.8439

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT01567	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.3	2.6e-22	92	193	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l++ EMT01567 92 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELMAKDLHDIPWKFRHIFRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--RDEKSQLLL 188 99***************************96555544..8**********************************************..456777899 PP EEE-S CS B3 95 kvfrk 99 +++r+ EMT01567 189 GIRRA 193 99997 PP
2	Auxin_resp	122.9	2.3e-40	218	300	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldpvrW+nS+Wr+L+ EMT01567 218 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 300 79*******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.62E-43	82	221	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.5E-40	84	207	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.40E-18	91	192	No hit	No description
PROSITE profile	PS50863	11.871	92	194	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.1E-20	92	193	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-21	92	194	IPR003340	B3 DNA binding domain
Pfam	PF06507	3.8E-35	218	300	IPR010525	Auxin response factor
PROSITE profile	PS51745	19.171	965	1051	IPR000270	PB1 domain
SuperFamily	SSF54277	8.63E-5	982	1034	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010311	Biological Process	lateral root formation
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1052 aa Download sequence Send to blast
MPPVGSLVVY FPQGHSEQVA ASMHKEVDII PNYPSLPSKL ICKLLSLTLH ADSETDEVYA 60 QMTLQPVNKY DRDAMLASEL GLKQNKQPVE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP 120 LDFTMQPPAQ ELMAKDLHDI PWKFRHIFRG QPKRHLLTTG WSVFVSTKRL LAGDSVLFIR 180 DEKSQLLLGI RRATRPQPAL SSSVLSSDSM HIGILAAAAH AAANSSPFTI FYNPRASPSE 240 FVIPLAKYNK ALYTQVSLGM RFRMLFETED SGVRRYMGTI TGIGDLDPVR WKNSHWRNLQ 300 VGWDESTASE RRTRVSIWEI EPVATPFYIC PPPFFRPKLP KQPGLPGDTN VGWDESTASE 360 RRTRVSIWEI EPVATPFYIC PPPFFRPKLP KQPGMPDDES EVDSAFKRAM PWLGDDFALK 420 DVQSQLFPGL SLVQWMAMQQ NPQMLPAGAP AVQAPYLNSS AMAMQDGMGT GNDDLMRRFN 480 MQGQNIGLPN SQQVGSKMDH PAMAQHQQQS HQLQQQQQVQ QSQQSSVVQQ QQAQLLQQNV 540 IHLQQQQEHL QRQQSLPQQQ QEHLQRQQSQ PQQQLKTAAS MPSMEQHKLR EQQPQGGQAV 600 SQAQMLSQIF QPSSSQLQQL GLPKSPTQRP GFPGLPTASS LQQPALGQAP QVQQAAEYQQ 660 ALLQSQQQQL QQLSQPEMQL QLLQKIQQQN MLSQLNPQHQ SQLMQQLSQK NQEYLQQQIL 720 QHQLSGSDAM VQFKQSHQTP SNNITGSLTP QQLVRSHSAL AESEDPSSST APSASRLSPM 780 NSLSRTHQGS RNLTDMTTSP HIDNLLQEIQ SKPDNRNKND MQSSKEAIPV PNRYPVSDQL 840 DASSATSFCL DESPREGFSF PPVCLDSNAQ VDPRDNFLIA ENVDSLMPDA LLSRGMGSGK 900 DICNLPSGQR DHREVDNELS SAAFSSQSFG VPDISFKPGC SGDIAVNDGG MPSQGLWNNQ 960 TQRMRTFTKV QKRGSVGRSI DITRYTNYDE LRHDLACMFG IQGQLEDPYR MDWKLVYVDH 1020 ENDILLVGDD PWECSANRLI AELLRLVPTK IR

Sequence ? help Back to Top

Protein Sequence Length: 1052 aa Download sequence Send to blast

MPPVGSLVVY FPQGHSEQVA ASMHKEVDII PNYPSLPSKL ICKLLSLTLH ADSETDEVYA  60
QMTLQPVNKY DRDAMLASEL GLKQNKQPVE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP  120
LDFTMQPPAQ ELMAKDLHDI PWKFRHIFRG QPKRHLLTTG WSVFVSTKRL LAGDSVLFIR  180
DEKSQLLLGI RRATRPQPAL SSSVLSSDSM HIGILAAAAH AAANSSPFTI FYNPRASPSE  240
FVIPLAKYNK ALYTQVSLGM RFRMLFETED SGVRRYMGTI TGIGDLDPVR WKNSHWRNLQ  300
VGWDESTASE RRTRVSIWEI EPVATPFYIC PPPFFRPKLP KQPGLPGDTN VGWDESTASE  360
RRTRVSIWEI EPVATPFYIC PPPFFRPKLP KQPGMPDDES EVDSAFKRAM PWLGDDFALK  420
DVQSQLFPGL SLVQWMAMQQ NPQMLPAGAP AVQAPYLNSS AMAMQDGMGT GNDDLMRRFN  480
MQGQNIGLPN SQQVGSKMDH PAMAQHQQQS HQLQQQQQVQ QSQQSSVVQQ QQAQLLQQNV  540
IHLQQQQEHL QRQQSLPQQQ QEHLQRQQSQ PQQQLKTAAS MPSMEQHKLR EQQPQGGQAV  600
SQAQMLSQIF QPSSSQLQQL GLPKSPTQRP GFPGLPTASS LQQPALGQAP QVQQAAEYQQ  660
ALLQSQQQQL QQLSQPEMQL QLLQKIQQQN MLSQLNPQHQ SQLMQQLSQK NQEYLQQQIL  720
QHQLSGSDAM VQFKQSHQTP SNNITGSLTP QQLVRSHSAL AESEDPSSST APSASRLSPM  780
NSLSRTHQGS RNLTDMTTSP HIDNLLQEIQ SKPDNRNKND MQSSKEAIPV PNRYPVSDQL  840
DASSATSFCL DESPREGFSF PPVCLDSNAQ VDPRDNFLIA ENVDSLMPDA LLSRGMGSGK  900
DICNLPSGQR DHREVDNELS SAAFSSQSFG VPDISFKPGC SGDIAVNDGG MPSQGLWNNQ  960
TQRMRTFTKV QKRGSVGRSI DITRYTNYDE LRHDLACMFG IQGQLEDPYR MDWKLVYVDH  1020
ENDILLVGDD PWECSANRLI AELLRLVPTK IR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-150	1	321	66	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin under dark condition. {ECO:0000269\|PubMed:17408882}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374262	0.0	AK374262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058N24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149526.1	0.0	auxin response factor 16
Refseq	XP_020160269.1	0.0	auxin response factor 16
Swissprot	A3B9A0	0.0	ARFP_ORYSJ; Auxin response factor 16
TrEMBL	N1QRI9	0.0	N1QRI9_AEGTA; Auxin response factor
STRING	EMT01567	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9045	33	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Shen C, et al. OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.). Plant Cell Environ., 2013. 36(3): p. 607-20 [PMID:22913536] Shen C, et al. OsARF16 is involved in cytokinin-mediated inhibition of phosphate transport and phosphate signaling in rice (Oryza sativa L.). PLoS ONE, 2014. 9(11): p. e112906 [PMID:25386911] Shen C, et al. OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.). Plant Sci., 2015. 231: p. 148-58 [PMID:25576000]