PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01361
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 515aa    MW: 56056.6 Da    PI: 5.4662
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01361genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.63.5e-711464181273
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn..sseelaalklfsevsPilkfshlta 98 
               lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +        +   ++++     +  al + +e++P+l+f+h++a
  EMT01361 146 LVQLLVACAEAVACRDRAQAAALLRELQVGAPVHGTAFQRVASCFVQGLADRLALAHPPALGPAsMAFCLPRSSclDGARGEALAVAYELCPYLRFAHFVA 246
               689**************************************************996655543331333333333347778888899*************** PP

      GRAS  99 NqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
               N  Ilea+ege+ vH++D+++++Gl    QW aLl++La+R+ ++p+++R+Tgvg+    + ++++++g+ L+ +A+elg+++ef + v ++le+l++++L
  EMT01361 247 NTSILEAFEGESNVHVVDLGMTMGLnrghQWRALLDSLATRAcGKPARVRVTGVGA----RVDTMRAVGRELEAYANELGITLEFMA-VDRTLESLHVDDL 342
               *******************9865433333*************77777*********....9**************************.799********** PP

      GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                v+ +Ea+a+n+vl+lh +++es    +   +vL+++++lsPk +v+veq+a hn++ Fl rf+eal+yy+al+ + +a
  EMT01361 343 GVEADEAVAINSVLELHCVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNGPFFLGRFMEALHYYAALLYAADA 418
               ********************88877777...8*****************************************977665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.124120515IPR005202Transcription factor GRAS
PfamPF035141.2E-68146418IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MPMLPSSFTT SSSWQSHQDA SSICTNQELD YDHPYYFGIE EVAVDADELE LGLRAHKATR  60
VDYLSSPYQA SWPSAQADLE SSRVRKTKQF RDVLETCKQK VEAMEAMERS SSPVGSGGFE  120
EQGEAVVAVD DVRGGGGGSG ADGMRLVQLL VACAEAVACR DRAQAAALLR ELQVGAPVHG  180
TAFQRVASCF VQGLADRLAL AHPPALGPAS MAFCLPRSSC LDGARGEALA VAYELCPYLR  240
FAHFVANTSI LEAFEGESNV HVVDLGMTMG LNRGHQWRAL LDSLATRACG KPARVRVTGV  300
GARVDTMRAV GRELEAYANE LGITLEFMAV DRTLESLHVD DLGVEADEAV AINSVLELHC  360
VVKESRGALN SVLQTIRKLS PKAFVLVEQD AGHNGPFFLG RFMEALHYYA ALLYAADARA  420
AVYVMVGAVE VFTFIGQMEF FYEQARDALR SADLLRGDRA VQIRELGASP SCGGSRRHQR  480
WSPGVLDYFF AMFCVGNFGA YLLFAWWHNS KKTAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3915342326281Protein SCARECROW
5b3h_A2e-3915342325280Protein SCARECROW
5b3h_D2e-3915342325280Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195276.10.0DELLA protein SLN1-like
TrEMBLR7W3V30.0R7W3V3_AEGTA; Uncharacterized protein
STRINGEMT013610.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-33RGA-like 1